Hb_001584_180

Information

Type -
Description -
Location Contig1584: 116822-117150
Sequence    

Annotation

kegg
ID tcc:TCM_026794
description Photosystem II reaction center PsbP family protein isoform 1
nr
ID XP_007031203.1
description Photosystem II reaction center PsbP family protein isoform 1 [Theobroma cacao]
swissprot
ID O23403
description PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1
trembl
ID A0A061F332
description Photosystem II reaction center PsbP family protein isoform 1 OS=Theobroma cacao GN=TCM_026794 PE=4 SV=1
Gene Ontology
ID GO:0034357
description psbp domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_180 0.0 - - Photosystem II reaction center PsbP family protein isoform 1 [Theobroma cacao]
2 Hb_003598_040 0.2589807735 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
3 Hb_003891_070 0.2644059102 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
4 Hb_035662_010 0.2686215378 - - conserved hypothetical protein [Ricinus communis]
5 Hb_161478_010 0.275759282 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_007157_060 0.2854063727 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
7 Hb_010531_050 0.2868027847 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
8 Hb_128496_010 0.2876881352 - - unnamed protein product [Vitis vinifera]
9 Hb_013358_100 0.2907045808 - - unknown [Medicago truncatula]
10 Hb_002804_020 0.2928439314 - - epsin N-terminal homology domain-containing family protein [Populus trichocarpa]
11 Hb_000733_050 0.2932728526 - - PREDICTED: uncharacterized protein LOC105646910 isoform X2 [Jatropha curcas]
12 Hb_065841_010 0.2944868434 - - hypothetical protein JCGZ_18376 [Jatropha curcas]
13 Hb_010053_040 0.2949062305 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
14 Hb_116349_060 0.2953538921 - - PREDICTED: protein WVD2-like 1 isoform X2 [Brassica rapa]
15 Hb_000003_150 0.2970777598 - - PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
16 Hb_001218_050 0.2978829476 - - Ribosome-binding protein, putative [Ricinus communis]
17 Hb_000056_230 0.298181044 transcription factor TF Family: TCP hypothetical protein JCGZ_15588 [Jatropha curcas]
18 Hb_005730_130 0.2985683216 - - PRA1 family protein [Theobroma cacao]
19 Hb_188996_010 0.2987773361 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008511_060 0.2997222467 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]

Gene co-expression network

sample Hb_001584_180 Hb_001584_180 Hb_003598_040 Hb_003598_040 Hb_001584_180--Hb_003598_040 Hb_003891_070 Hb_003891_070 Hb_001584_180--Hb_003891_070 Hb_035662_010 Hb_035662_010 Hb_001584_180--Hb_035662_010 Hb_161478_010 Hb_161478_010 Hb_001584_180--Hb_161478_010 Hb_007157_060 Hb_007157_060 Hb_001584_180--Hb_007157_060 Hb_010531_050 Hb_010531_050 Hb_001584_180--Hb_010531_050 Hb_035318_010 Hb_035318_010 Hb_003598_040--Hb_035318_010 Hb_001488_340 Hb_001488_340 Hb_003598_040--Hb_001488_340 Hb_003297_010 Hb_003297_010 Hb_003598_040--Hb_003297_010 Hb_001218_050 Hb_001218_050 Hb_003598_040--Hb_001218_050 Hb_003064_030 Hb_003064_030 Hb_003598_040--Hb_003064_030 Hb_141532_010 Hb_141532_010 Hb_003598_040--Hb_141532_010 Hb_116349_060 Hb_116349_060 Hb_003891_070--Hb_116349_060 Hb_010053_040 Hb_010053_040 Hb_003891_070--Hb_010053_040 Hb_001269_200 Hb_001269_200 Hb_003891_070--Hb_001269_200 Hb_001807_010 Hb_001807_010 Hb_003891_070--Hb_001807_010 Hb_002928_010 Hb_002928_010 Hb_003891_070--Hb_002928_010 Hb_000735_050 Hb_000735_050 Hb_003891_070--Hb_000735_050 Hb_000928_150 Hb_000928_150 Hb_035662_010--Hb_000928_150 Hb_001677_050 Hb_001677_050 Hb_035662_010--Hb_001677_050 Hb_000056_230 Hb_000056_230 Hb_035662_010--Hb_000056_230 Hb_114984_010 Hb_114984_010 Hb_035662_010--Hb_114984_010 Hb_001632_010 Hb_001632_010 Hb_035662_010--Hb_001632_010 Hb_035662_010--Hb_010531_050 Hb_074449_010 Hb_074449_010 Hb_161478_010--Hb_074449_010 Hb_162040_010 Hb_162040_010 Hb_161478_010--Hb_162040_010 Hb_001085_260 Hb_001085_260 Hb_161478_010--Hb_001085_260 Hb_002485_030 Hb_002485_030 Hb_161478_010--Hb_002485_030 Hb_007951_040 Hb_007951_040 Hb_161478_010--Hb_007951_040 Hb_007477_030 Hb_007477_030 Hb_161478_010--Hb_007477_030 Hb_065841_010 Hb_065841_010 Hb_007157_060--Hb_065841_010 Hb_006483_030 Hb_006483_030 Hb_007157_060--Hb_006483_030 Hb_007749_010 Hb_007749_010 Hb_007157_060--Hb_007749_010 Hb_145317_010 Hb_145317_010 Hb_007157_060--Hb_145317_010 Hb_000181_290 Hb_000181_290 Hb_007157_060--Hb_000181_290 Hb_000818_100 Hb_000818_100 Hb_007157_060--Hb_000818_100 Hb_000997_410 Hb_000997_410 Hb_010531_050--Hb_000997_410 Hb_001622_010 Hb_001622_010 Hb_010531_050--Hb_001622_010 Hb_031527_070 Hb_031527_070 Hb_010531_050--Hb_031527_070 Hb_010531_050--Hb_114984_010 Hb_000984_250 Hb_000984_250 Hb_010531_050--Hb_000984_250 Hb_005464_030 Hb_005464_030 Hb_010531_050--Hb_005464_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.64582 0.445593 1.31695 2.2367 0.782431 1.25473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.651845 0 0.61342 0

CAGE analysis