Hb_001584_190

Information

Type -
Description -
Location Contig1584: 117469-121346
Sequence    

Annotation

kegg
ID rcu:RCOM_1435740
description clathrin coat adaptor ap3 medium chain, putative
nr
ID XP_002512538.1
description clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
swissprot
ID F4I562
description AP-3 complex subunit mu OS=Arabidopsis thaliana GN=AP3M PE=1 SV=1
trembl
ID B9RFL9
description Clathrin coat adaptor ap3 medium chain, putative OS=Ricinus communis GN=RCOM_1435740 PE=4 SV=1
Gene Ontology
ID GO:0030131
description ap-3 complex subunit mu

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13978: 117529-121232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_190 0.0 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
2 Hb_000479_190 0.0489121001 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012799_160 0.0744129201 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
4 Hb_000331_450 0.0767363708 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
5 Hb_002759_060 0.0791517124 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
6 Hb_010042_010 0.0794984262 - - Urease accessory protein ureD, putative [Ricinus communis]
7 Hb_006846_060 0.0811115702 - - inositol hexaphosphate kinase, putative [Ricinus communis]
8 Hb_002207_110 0.0833199154 - - -
9 Hb_000270_370 0.0851685398 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
10 Hb_000707_030 0.0852483356 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]
11 Hb_004032_100 0.0857336883 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
12 Hb_003108_020 0.0863070369 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
13 Hb_000162_260 0.0887702235 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1 [Nelumbo nucifera]
14 Hb_004032_010 0.0889328149 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
15 Hb_000985_060 0.0889886316 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
16 Hb_037887_010 0.0892145441 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
17 Hb_000083_170 0.0913894454 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
18 Hb_001461_010 0.0921739495 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
19 Hb_000363_360 0.0925781938 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
20 Hb_001369_690 0.0927456795 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001584_190 Hb_001584_190 Hb_000479_190 Hb_000479_190 Hb_001584_190--Hb_000479_190 Hb_012799_160 Hb_012799_160 Hb_001584_190--Hb_012799_160 Hb_000331_450 Hb_000331_450 Hb_001584_190--Hb_000331_450 Hb_002759_060 Hb_002759_060 Hb_001584_190--Hb_002759_060 Hb_010042_010 Hb_010042_010 Hb_001584_190--Hb_010042_010 Hb_006846_060 Hb_006846_060 Hb_001584_190--Hb_006846_060 Hb_000985_060 Hb_000985_060 Hb_000479_190--Hb_000985_060 Hb_003502_090 Hb_003502_090 Hb_000479_190--Hb_003502_090 Hb_003108_020 Hb_003108_020 Hb_000479_190--Hb_003108_020 Hb_001205_150 Hb_001205_150 Hb_000479_190--Hb_001205_150 Hb_000363_360 Hb_000363_360 Hb_000479_190--Hb_000363_360 Hb_001789_070 Hb_001789_070 Hb_012799_160--Hb_001789_070 Hb_003125_010 Hb_003125_010 Hb_012799_160--Hb_003125_010 Hb_002207_110 Hb_002207_110 Hb_012799_160--Hb_002207_110 Hb_000529_190 Hb_000529_190 Hb_012799_160--Hb_000529_190 Hb_012799_160--Hb_000479_190 Hb_025240_040 Hb_025240_040 Hb_012799_160--Hb_025240_040 Hb_015807_040 Hb_015807_040 Hb_000331_450--Hb_015807_040 Hb_000331_450--Hb_010042_010 Hb_012053_070 Hb_012053_070 Hb_000331_450--Hb_012053_070 Hb_001369_690 Hb_001369_690 Hb_000331_450--Hb_001369_690 Hb_017413_010 Hb_017413_010 Hb_000331_450--Hb_017413_010 Hb_000331_450--Hb_003125_010 Hb_004218_110 Hb_004218_110 Hb_002759_060--Hb_004218_110 Hb_001833_110 Hb_001833_110 Hb_002759_060--Hb_001833_110 Hb_027073_040 Hb_027073_040 Hb_002759_060--Hb_027073_040 Hb_003996_020 Hb_003996_020 Hb_002759_060--Hb_003996_020 Hb_002759_060--Hb_025240_040 Hb_000058_060 Hb_000058_060 Hb_002759_060--Hb_000058_060 Hb_010042_010--Hb_015807_040 Hb_001461_010 Hb_001461_010 Hb_010042_010--Hb_001461_010 Hb_065525_020 Hb_065525_020 Hb_010042_010--Hb_065525_020 Hb_000934_250 Hb_000934_250 Hb_010042_010--Hb_000934_250 Hb_008544_010 Hb_008544_010 Hb_010042_010--Hb_008544_010 Hb_006846_060--Hb_017413_010 Hb_006846_060--Hb_012799_160 Hb_003964_100 Hb_003964_100 Hb_006846_060--Hb_003964_100 Hb_006816_210 Hb_006816_210 Hb_006846_060--Hb_006816_210 Hb_000270_370 Hb_000270_370 Hb_006846_060--Hb_000270_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.45773 1.44428 2.83551 7.7103 5.3394 8.98361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.27211 11.1183 9.40424 5.64996 2.67645

CAGE analysis