Hb_001584_210

Information

Type -
Description -
Location Contig1584: 129348-134006
Sequence    

Annotation

kegg
ID rcu:RCOM_1435770
description NAD dependent epimerase/dehydratase, putative
nr
ID XP_012088856.1
description PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
swissprot
ID Q9SA52
description Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana GN=CSP41B PE=1 SV=1
trembl
ID A0A067JHM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23195 PE=4 SV=1
Gene Ontology
ID GO:0005773
description chloroplast stem-loop binding protein of 41 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13980: 129391-134004 , PASA_asmbl_13981: 131901-132291
cDNA
(Sanger)
(ID:Location)		 008_H02.ab1: 129442-132511 , 009_D16.ab1: 129413-131728

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_210 0.0 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
2 Hb_011344_030 0.0851053807 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
3 Hb_002003_130 0.0858875523 - - hypothetical protein CISIN_1g027843mg [Citrus sinensis]
4 Hb_002333_040 0.0881118408 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
5 Hb_007044_270 0.0920390283 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
6 Hb_001517_010 0.0935576276 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001195_290 0.0957186365 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
8 Hb_000009_470 0.0970940585 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
9 Hb_001775_100 0.0985597002 - - PREDICTED: probable 2-carboxy-D-arabinitol-1-phosphatase [Jatropha curcas]
10 Hb_007044_020 0.1050810127 - - unnamed protein product [Vitis vinifera]
11 Hb_003602_100 0.1075832082 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
12 Hb_005523_040 0.1095931949 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
13 Hb_003847_070 0.1105737547 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
14 Hb_123689_010 0.1115365038 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
15 Hb_000221_130 0.1123754001 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
16 Hb_005063_060 0.1124278697 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105647704 [Jatropha curcas]
17 Hb_023344_040 0.1128998099 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004128_170 0.1129244961 - - hypothetical protein POPTR_0016s08350g [Populus trichocarpa]
19 Hb_007595_020 0.1138349131 - - maturase K [Hevea brasiliensis]
20 Hb_010080_070 0.1138963549 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001584_210 Hb_001584_210 Hb_011344_030 Hb_011344_030 Hb_001584_210--Hb_011344_030 Hb_002003_130 Hb_002003_130 Hb_001584_210--Hb_002003_130 Hb_002333_040 Hb_002333_040 Hb_001584_210--Hb_002333_040 Hb_007044_270 Hb_007044_270 Hb_001584_210--Hb_007044_270 Hb_001517_010 Hb_001517_010 Hb_001584_210--Hb_001517_010 Hb_001195_290 Hb_001195_290 Hb_001584_210--Hb_001195_290 Hb_000009_470 Hb_000009_470 Hb_011344_030--Hb_000009_470 Hb_023344_040 Hb_023344_040 Hb_011344_030--Hb_023344_040 Hb_000111_460 Hb_000111_460 Hb_011344_030--Hb_000111_460 Hb_001135_170 Hb_001135_170 Hb_011344_030--Hb_001135_170 Hb_007044_020 Hb_007044_020 Hb_011344_030--Hb_007044_020 Hb_000992_090 Hb_000992_090 Hb_011344_030--Hb_000992_090 Hb_004128_170 Hb_004128_170 Hb_002003_130--Hb_004128_170 Hb_002003_130--Hb_007044_270 Hb_000077_380 Hb_000077_380 Hb_002003_130--Hb_000077_380 Hb_005063_060 Hb_005063_060 Hb_002003_130--Hb_005063_060 Hb_000098_040 Hb_000098_040 Hb_002003_130--Hb_000098_040 Hb_005348_120 Hb_005348_120 Hb_002333_040--Hb_005348_120 Hb_000107_540 Hb_000107_540 Hb_002333_040--Hb_000107_540 Hb_002333_040--Hb_000009_470 Hb_000017_210 Hb_000017_210 Hb_002333_040--Hb_000017_210 Hb_000694_080 Hb_000694_080 Hb_002333_040--Hb_000694_080 Hb_000320_370 Hb_000320_370 Hb_007044_270--Hb_000320_370 Hb_002809_030 Hb_002809_030 Hb_007044_270--Hb_002809_030 Hb_001958_060 Hb_001958_060 Hb_007044_270--Hb_001958_060 Hb_117807_020 Hb_117807_020 Hb_007044_270--Hb_117807_020 Hb_000230_420 Hb_000230_420 Hb_007044_270--Hb_000230_420 Hb_001277_350 Hb_001277_350 Hb_007044_270--Hb_001277_350 Hb_001517_010--Hb_001195_290 Hb_001517_010--Hb_000107_540 Hb_005523_040 Hb_005523_040 Hb_001517_010--Hb_005523_040 Hb_134949_010 Hb_134949_010 Hb_001517_010--Hb_134949_010 Hb_001691_180 Hb_001691_180 Hb_001517_010--Hb_001691_180 Hb_006472_040 Hb_006472_040 Hb_001195_290--Hb_006472_040 Hb_008112_020 Hb_008112_020 Hb_001195_290--Hb_008112_020 Hb_005210_010 Hb_005210_010 Hb_001195_290--Hb_005210_010 Hb_001268_170 Hb_001268_170 Hb_001195_290--Hb_001268_170 Hb_001195_290--Hb_134949_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.30722 14.1367 125.227 67.652 3.4 4.46411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.30905 2.16509 1.74048 2.50152 354.662

CAGE analysis