Hb_001584_230

Information

Type -
Description -
Location Contig1584: 138530-139075
Sequence    

Annotation

kegg
ID pop:POPTR_0005s00890g
description invertase/pectin methylesterase inhibitor family protein
nr
ID XP_006382310.1
description invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]
swissprot
ID P83326
description Pectinesterase inhibitor OS=Actinidia deliciosa GN=PMEI PE=1 SV=2
trembl
ID B9N451
description Invertase/pectin methylesterase inhibitor family protein OS=Populus trichocarpa GN=POPTR_0005s00890g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13982: 137463-138001
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_230 0.0 - - invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]
2 Hb_005799_030 0.0641452861 - - PREDICTED: uncharacterized protein LOC103926623 [Pyrus x bretschneideri]
3 Hb_001135_270 0.0775629572 - - -
4 Hb_081636_010 0.0864125095 - - -
5 Hb_000123_390 0.1024379012 - - conserved hypothetical protein [Ricinus communis]
6 Hb_029866_010 0.1503321323 - - -
7 Hb_001899_010 0.1612398296 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
8 Hb_114868_010 0.1612886088 - - -
9 Hb_179763_010 0.163161689 - - -
10 Hb_013983_010 0.1769615677 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
11 Hb_033225_020 0.1772343728 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005116_020 0.1937441234 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
13 Hb_067345_050 0.2079638505 - - PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]
14 Hb_003529_220 0.2130523593 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
15 Hb_003529_210 0.2158219175 - - -
16 Hb_002232_200 0.2223039925 - - PREDICTED: sugar carrier protein C-like [Jatropha curcas]
17 Hb_000345_480 0.2270269157 - - cyclin-dependent protein kinase, putative [Ricinus communis]
18 Hb_066784_020 0.2304801699 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001159_210 0.2309704303 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
20 Hb_009686_010 0.2314649148 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001584_230 Hb_001584_230 Hb_005799_030 Hb_005799_030 Hb_001584_230--Hb_005799_030 Hb_001135_270 Hb_001135_270 Hb_001584_230--Hb_001135_270 Hb_081636_010 Hb_081636_010 Hb_001584_230--Hb_081636_010 Hb_000123_390 Hb_000123_390 Hb_001584_230--Hb_000123_390 Hb_029866_010 Hb_029866_010 Hb_001584_230--Hb_029866_010 Hb_001899_010 Hb_001899_010 Hb_001584_230--Hb_001899_010 Hb_005799_030--Hb_001135_270 Hb_005799_030--Hb_081636_010 Hb_005799_030--Hb_000123_390 Hb_005799_030--Hb_001899_010 Hb_179763_010 Hb_179763_010 Hb_005799_030--Hb_179763_010 Hb_001135_270--Hb_081636_010 Hb_067345_050 Hb_067345_050 Hb_001135_270--Hb_067345_050 Hb_001135_270--Hb_000123_390 Hb_001135_270--Hb_001899_010 Hb_013983_010 Hb_013983_010 Hb_081636_010--Hb_013983_010 Hb_081636_010--Hb_067345_050 Hb_081636_010--Hb_029866_010 Hb_000123_390--Hb_081636_010 Hb_000123_390--Hb_001899_010 Hb_000123_390--Hb_179763_010 Hb_029866_010--Hb_013983_010 Hb_001125_030 Hb_001125_030 Hb_029866_010--Hb_001125_030 Hb_033225_020 Hb_033225_020 Hb_029866_010--Hb_033225_020 Hb_059126_010 Hb_059126_010 Hb_029866_010--Hb_059126_010 Hb_000345_480 Hb_000345_480 Hb_029866_010--Hb_000345_480 Hb_003529_210 Hb_003529_210 Hb_001899_010--Hb_003529_210 Hb_001899_010--Hb_179763_010 Hb_003529_220 Hb_003529_220 Hb_001899_010--Hb_003529_220 Hb_066784_020 Hb_066784_020 Hb_001899_010--Hb_066784_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.354929 0 0 0 2.00798 1.01462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis