Hb_001584_240

Information

Type -
Description -
Location Contig1584: 139968-142165
Sequence    

Annotation

kegg
ID atr:s00939p00005100
description AMTR_s00939p00005100; hypothetical protein
nr
ID AAP80941.1
description ADP-ribosylation factor [Gossypium barbadense]
swissprot
ID O48920
description ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3
trembl
ID Q6XD33
description ADP-ribosylation factor (Fragment) OS=Gossypium barbadense GN=arf1 PE=2 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13983: 139973-143021 , PASA_asmbl_13984: 140247-140548
cDNA
(Sanger)
(ID:Location)		 041_M24.ab1: 140138-143021

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_240 0.0 - - ADP-ribosylation factor [Gossypium barbadense]
2 Hb_002960_130 0.1311826471 - - hypothetical protein B456_008G036100 [Gossypium raimondii]
3 Hb_000671_130 0.1318686695 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
4 Hb_001195_070 0.1418258628 - - PREDICTED: protein RER1B-like [Jatropha curcas]
5 Hb_048476_060 0.1451040943 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
6 Hb_083380_020 0.1467757515 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
7 Hb_001208_040 0.1472153043 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
8 Hb_000062_090 0.1539799488 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
9 Hb_019181_030 0.1561077931 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
10 Hb_004158_020 0.1562094086 - - Rab1 [Hevea brasiliensis]
11 Hb_004116_020 0.1584424901 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
12 Hb_003103_010 0.1592303767 - - conserved hypothetical protein [Ricinus communis]
13 Hb_122636_010 0.1600288062 - - dienelactone hydrolase family protein [Populus trichocarpa]
14 Hb_030992_010 0.1600997357 - - acetylornithine aminotransferase, putative [Ricinus communis]
15 Hb_000217_020 0.1605987656 - - AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]
16 Hb_002154_110 0.1621614075 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
17 Hb_007390_020 0.1645566346 - - PREDICTED: protein FMP32, mitochondrial-like [Populus euphratica]
18 Hb_000962_070 0.164751257 - - PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_006711_090 0.1657686788 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
20 Hb_000345_080 0.1662029079 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]

Gene co-expression network

sample Hb_001584_240 Hb_001584_240 Hb_002960_130 Hb_002960_130 Hb_001584_240--Hb_002960_130 Hb_000671_130 Hb_000671_130 Hb_001584_240--Hb_000671_130 Hb_001195_070 Hb_001195_070 Hb_001584_240--Hb_001195_070 Hb_048476_060 Hb_048476_060 Hb_001584_240--Hb_048476_060 Hb_083380_020 Hb_083380_020 Hb_001584_240--Hb_083380_020 Hb_001208_040 Hb_001208_040 Hb_001584_240--Hb_001208_040 Hb_019181_030 Hb_019181_030 Hb_002960_130--Hb_019181_030 Hb_001747_030 Hb_001747_030 Hb_002960_130--Hb_001747_030 Hb_002960_130--Hb_001208_040 Hb_000683_100 Hb_000683_100 Hb_002960_130--Hb_000683_100 Hb_000217_020 Hb_000217_020 Hb_002960_130--Hb_000217_020 Hb_122636_010 Hb_122636_010 Hb_000671_130--Hb_122636_010 Hb_091349_010 Hb_091349_010 Hb_000671_130--Hb_091349_010 Hb_003207_020 Hb_003207_020 Hb_000671_130--Hb_003207_020 Hb_033152_070 Hb_033152_070 Hb_000671_130--Hb_033152_070 Hb_000107_110 Hb_000107_110 Hb_000671_130--Hb_000107_110 Hb_000671_130--Hb_048476_060 Hb_008699_030 Hb_008699_030 Hb_001195_070--Hb_008699_030 Hb_015675_030 Hb_015675_030 Hb_001195_070--Hb_015675_030 Hb_000175_260 Hb_000175_260 Hb_001195_070--Hb_000175_260 Hb_003103_010 Hb_003103_010 Hb_001195_070--Hb_003103_010 Hb_001195_070--Hb_000671_130 Hb_002193_060 Hb_002193_060 Hb_048476_060--Hb_002193_060 Hb_185830_060 Hb_185830_060 Hb_048476_060--Hb_185830_060 Hb_048476_060--Hb_003207_020 Hb_000110_050 Hb_000110_050 Hb_048476_060--Hb_000110_050 Hb_000402_130 Hb_000402_130 Hb_048476_060--Hb_000402_130 Hb_002007_320 Hb_002007_320 Hb_048476_060--Hb_002007_320 Hb_010368_050 Hb_010368_050 Hb_083380_020--Hb_010368_050 Hb_008147_090 Hb_008147_090 Hb_083380_020--Hb_008147_090 Hb_007101_110 Hb_007101_110 Hb_083380_020--Hb_007101_110 Hb_001951_130 Hb_001951_130 Hb_083380_020--Hb_001951_130 Hb_000181_350 Hb_000181_350 Hb_083380_020--Hb_000181_350 Hb_001511_260 Hb_001511_260 Hb_083380_020--Hb_001511_260 Hb_001208_030 Hb_001208_030 Hb_001208_040--Hb_001208_030 Hb_001208_040--Hb_000217_020 Hb_000016_060 Hb_000016_060 Hb_001208_040--Hb_000016_060 Hb_006452_110 Hb_006452_110 Hb_001208_040--Hb_006452_110 Hb_007390_020 Hb_007390_020 Hb_001208_040--Hb_007390_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8352 10.9662 56.2398 195.921 12.1353 25.584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.5892 84.657 32.1517 24.9209 61.8931

CAGE analysis