Hb_001584_270

Information

Type -
Description -
Location Contig1584: 158289-158624
Sequence    

Annotation

kegg
ID rcu:RCOM_1436110
description hypothetical protein
nr
ID XP_002512555.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFN6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1436110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13988: 157822-158617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_270 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000115_200 0.0943649125 - - PREDICTED: endonuclease 2 [Jatropha curcas]
3 Hb_003055_100 0.1015868761 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
4 Hb_002600_120 0.105997295 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
5 Hb_002014_130 0.1071605429 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006386_010 0.1094679287 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
7 Hb_005291_020 0.1098899524 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001534_140 0.1123382361 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
9 Hb_007760_020 0.1152480979 - - PREDICTED: expansin-A1 [Populus euphratica]
10 Hb_010142_060 0.1158767214 - - Blue copper protein precursor, putative [Ricinus communis]
11 Hb_000462_120 0.118028129 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
12 Hb_001195_710 0.119072532 - - glycosyltransferase family GT8 protein [Populus deltoides]
13 Hb_003580_020 0.1197914831 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006717_060 0.1226668453 - - PREDICTED: peroxidase 42 [Jatropha curcas]
15 Hb_005116_150 0.1264535969 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
16 Hb_005332_160 0.1306914701 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
17 Hb_031579_010 0.1308893469 - - JHL22C18.10 [Jatropha curcas]
18 Hb_001456_030 0.131789846 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
19 Hb_001268_290 0.1348486228 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
20 Hb_005616_020 0.1357178803 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001584_270 Hb_001584_270 Hb_000115_200 Hb_000115_200 Hb_001584_270--Hb_000115_200 Hb_003055_100 Hb_003055_100 Hb_001584_270--Hb_003055_100 Hb_002600_120 Hb_002600_120 Hb_001584_270--Hb_002600_120 Hb_002014_130 Hb_002014_130 Hb_001584_270--Hb_002014_130 Hb_006386_010 Hb_006386_010 Hb_001584_270--Hb_006386_010 Hb_005291_020 Hb_005291_020 Hb_001584_270--Hb_005291_020 Hb_000115_200--Hb_002014_130 Hb_000115_200--Hb_005291_020 Hb_003580_020 Hb_003580_020 Hb_000115_200--Hb_003580_020 Hb_000115_200--Hb_003055_100 Hb_006717_060 Hb_006717_060 Hb_000115_200--Hb_006717_060 Hb_000917_030 Hb_000917_030 Hb_003055_100--Hb_000917_030 Hb_003055_100--Hb_006386_010 Hb_001195_710 Hb_001195_710 Hb_003055_100--Hb_001195_710 Hb_031579_010 Hb_031579_010 Hb_003055_100--Hb_031579_010 Hb_004531_160 Hb_004531_160 Hb_002600_120--Hb_004531_160 Hb_002701_030 Hb_002701_030 Hb_002600_120--Hb_002701_030 Hb_010142_060 Hb_010142_060 Hb_002600_120--Hb_010142_060 Hb_003849_170 Hb_003849_170 Hb_002600_120--Hb_003849_170 Hb_000093_010 Hb_000093_010 Hb_002600_120--Hb_000093_010 Hb_005648_020 Hb_005648_020 Hb_002600_120--Hb_005648_020 Hb_002014_130--Hb_005291_020 Hb_002014_130--Hb_003580_020 Hb_002014_130--Hb_006717_060 Hb_000497_030 Hb_000497_030 Hb_002014_130--Hb_000497_030 Hb_000408_060 Hb_000408_060 Hb_002014_130--Hb_000408_060 Hb_009421_060 Hb_009421_060 Hb_002014_130--Hb_009421_060 Hb_001268_290 Hb_001268_290 Hb_006386_010--Hb_001268_290 Hb_001019_030 Hb_001019_030 Hb_006386_010--Hb_001019_030 Hb_001410_080 Hb_001410_080 Hb_006386_010--Hb_001410_080 Hb_000910_030 Hb_000910_030 Hb_006386_010--Hb_000910_030 Hb_000344_030 Hb_000344_030 Hb_006386_010--Hb_000344_030 Hb_006386_010--Hb_001195_710 Hb_005291_020--Hb_003580_020 Hb_000462_120 Hb_000462_120 Hb_005291_020--Hb_000462_120 Hb_180518_010 Hb_180518_010 Hb_005291_020--Hb_180518_010 Hb_027577_010 Hb_027577_010 Hb_005291_020--Hb_027577_010 Hb_005291_020--Hb_000497_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.11811 7.8028 61.993 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.899247 0 3.74311 19.5252

CAGE analysis