Hb_001584_300

Information

Type -
Description -
Location Contig1584: 168347-172259
Sequence    

Annotation

kegg
ID pop:POPTR_0013s00650g
description POPTRDRAFT_834444; pyrrolidone-carboxylate peptidase family protein
nr
ID XP_012088846.1
description PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
swissprot
ID Q7MG84
description Pyrrolidone-carboxylate peptidase OS=Vibrio vulnificus (strain YJ016) GN=pcp PE=3 SV=1
trembl
ID A0A067JHL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23185 PE=4 SV=1
Gene Ontology
ID GO:0005829
description peptidase pyroglutamyl peptidase i-like isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13991: 168831-172203 , PASA_asmbl_13992: 168701-172203 , PASA_asmbl_13993: 170438-170986
cDNA
(Sanger)
(ID:Location)		 025_F07.ab1: 168701-171865 , 042_B22.ab1: 168879-171776

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_300 0.0 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
2 Hb_000085_250 0.0690748798 - - sodium/hydrogen exchanger, putative [Ricinus communis]
3 Hb_002660_160 0.1024339658 - - protein binding protein, putative [Ricinus communis]
4 Hb_006132_060 0.1082760767 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
5 Hb_001677_110 0.1084721797 - - Protein YIPF1, putative [Ricinus communis]
6 Hb_002352_010 0.1091804587 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
7 Hb_000345_030 0.1104459556 - - REF-like stress related protein 1 [Hevea brasiliensis]
8 Hb_010344_040 0.1104485116 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
9 Hb_004077_030 0.1130863996 - - hypothetical protein EUGRSUZ_K01571 [Eucalyptus grandis]
10 Hb_002735_060 0.1133068713 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
11 Hb_002282_020 0.1142484591 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
12 Hb_002539_080 0.11616087 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
13 Hb_000032_220 0.1167259943 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
14 Hb_157022_020 0.1183712573 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
15 Hb_010172_030 0.1198058693 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
16 Hb_004410_010 0.1213465614 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
17 Hb_116264_010 0.1214492443 - - hypothetical protein JCGZ_05585 [Jatropha curcas]
18 Hb_002387_060 0.1235478142 - - conserved hypothetical protein [Ricinus communis]
19 Hb_026988_020 0.1240320257 - - outward rectifying K+ channel [Hevea brasiliensis]
20 Hb_002447_030 0.1247273305 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]

Gene co-expression network

sample Hb_001584_300 Hb_001584_300 Hb_000085_250 Hb_000085_250 Hb_001584_300--Hb_000085_250 Hb_002660_160 Hb_002660_160 Hb_001584_300--Hb_002660_160 Hb_006132_060 Hb_006132_060 Hb_001584_300--Hb_006132_060 Hb_001677_110 Hb_001677_110 Hb_001584_300--Hb_001677_110 Hb_002352_010 Hb_002352_010 Hb_001584_300--Hb_002352_010 Hb_000345_030 Hb_000345_030 Hb_001584_300--Hb_000345_030 Hb_000085_250--Hb_002660_160 Hb_002282_020 Hb_002282_020 Hb_000085_250--Hb_002282_020 Hb_002387_060 Hb_002387_060 Hb_000085_250--Hb_002387_060 Hb_000032_220 Hb_000032_220 Hb_000085_250--Hb_000032_220 Hb_010172_030 Hb_010172_030 Hb_000085_250--Hb_010172_030 Hb_000362_210 Hb_000362_210 Hb_002660_160--Hb_000362_210 Hb_007021_020 Hb_007021_020 Hb_002660_160--Hb_007021_020 Hb_002660_160--Hb_010172_030 Hb_007047_010 Hb_007047_010 Hb_002660_160--Hb_007047_010 Hb_002749_100 Hb_002749_100 Hb_002660_160--Hb_002749_100 Hb_000787_070 Hb_000787_070 Hb_006132_060--Hb_000787_070 Hb_006132_060--Hb_000345_030 Hb_024505_040 Hb_024505_040 Hb_006132_060--Hb_024505_040 Hb_006132_060--Hb_002387_060 Hb_005016_130 Hb_005016_130 Hb_006132_060--Hb_005016_130 Hb_026988_020 Hb_026988_020 Hb_001677_110--Hb_026988_020 Hb_001677_110--Hb_002352_010 Hb_001473_130 Hb_001473_130 Hb_001677_110--Hb_001473_130 Hb_000001_050 Hb_000001_050 Hb_001677_110--Hb_000001_050 Hb_008311_010 Hb_008311_010 Hb_001677_110--Hb_008311_010 Hb_002716_070 Hb_002716_070 Hb_001677_110--Hb_002716_070 Hb_002352_010--Hb_001473_130 Hb_002527_070 Hb_002527_070 Hb_002352_010--Hb_002527_070 Hb_000427_110 Hb_000427_110 Hb_002352_010--Hb_000427_110 Hb_002326_030 Hb_002326_030 Hb_002352_010--Hb_002326_030 Hb_012522_030 Hb_012522_030 Hb_002352_010--Hb_012522_030 Hb_000345_040 Hb_000345_040 Hb_000345_030--Hb_000345_040 Hb_004077_030 Hb_004077_030 Hb_000345_030--Hb_004077_030 Hb_000419_040 Hb_000419_040 Hb_000345_030--Hb_000419_040 Hb_002685_090 Hb_002685_090 Hb_000345_030--Hb_002685_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
199.945 22.2798 13.0267 123.656 211.132 238.692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
541.425 416.968 418.686 53.3419 16.6857

CAGE analysis