Hb_001584_330

Information

Type -
Description -
Location Contig1584: 183600-188707
Sequence    

Annotation

kegg
ID pop:POPTR_0005s00710g
description Glycogen synthase kinase-3 MsK-1 family protein
nr
ID XP_012088843.1
description PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
swissprot
ID P43288
description Shaggy-related protein kinase alpha OS=Arabidopsis thaliana GN=ASK1 PE=1 SV=3
trembl
ID A0A0E0JHG5
description Uncharacterized protein OS=Oryza punctata PE=4 SV=1
Gene Ontology
ID GO:0004672
description shaggy-related protein kinase alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14002: 185259-188670
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_330 0.0 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
2 Hb_001623_420 0.0495665793 - - nucleotide binding protein, putative [Ricinus communis]
3 Hb_005306_110 0.064128065 - - casein kinase, putative [Ricinus communis]
4 Hb_004812_010 0.0648487888 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
5 Hb_006400_040 0.0657720779 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
6 Hb_000120_950 0.0667107179 - - PREDICTED: protein GRIP [Jatropha curcas]
7 Hb_000139_410 0.0682639537 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
8 Hb_010381_070 0.070738956 - - PREDICTED: protein STU1-like [Jatropha curcas]
9 Hb_000030_010 0.0717028102 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
10 Hb_001377_290 0.0736406637 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
11 Hb_001030_120 0.0742079663 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
12 Hb_082609_020 0.0752301296 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004109_200 0.0773818485 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
14 Hb_002685_140 0.0776787017 - - PREDICTED: membrin-11 [Jatropha curcas]
15 Hb_007908_020 0.0782157031 - - zinc finger family protein [Populus trichocarpa]
16 Hb_000190_140 0.0791396719 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
17 Hb_000754_060 0.0794197455 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
18 Hb_001604_010 0.0814779807 - - 14-3-3 protein, putative [Ricinus communis]
19 Hb_005062_070 0.0826189369 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
20 Hb_001811_150 0.0830777475 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001584_330 Hb_001584_330 Hb_001623_420 Hb_001623_420 Hb_001584_330--Hb_001623_420 Hb_005306_110 Hb_005306_110 Hb_001584_330--Hb_005306_110 Hb_004812_010 Hb_004812_010 Hb_001584_330--Hb_004812_010 Hb_006400_040 Hb_006400_040 Hb_001584_330--Hb_006400_040 Hb_000120_950 Hb_000120_950 Hb_001584_330--Hb_000120_950 Hb_000139_410 Hb_000139_410 Hb_001584_330--Hb_000139_410 Hb_001623_420--Hb_000120_950 Hb_000224_170 Hb_000224_170 Hb_001623_420--Hb_000224_170 Hb_001623_420--Hb_005306_110 Hb_002685_140 Hb_002685_140 Hb_001623_420--Hb_002685_140 Hb_010381_070 Hb_010381_070 Hb_001623_420--Hb_010381_070 Hb_033153_050 Hb_033153_050 Hb_005306_110--Hb_033153_050 Hb_000943_070 Hb_000943_070 Hb_005306_110--Hb_000943_070 Hb_005306_110--Hb_000120_950 Hb_003642_060 Hb_003642_060 Hb_005306_110--Hb_003642_060 Hb_001138_050 Hb_001138_050 Hb_004812_010--Hb_001138_050 Hb_007508_070 Hb_007508_070 Hb_004812_010--Hb_007508_070 Hb_006922_100 Hb_006922_100 Hb_004812_010--Hb_006922_100 Hb_004812_010--Hb_002685_140 Hb_001377_290 Hb_001377_290 Hb_004812_010--Hb_001377_290 Hb_002027_260 Hb_002027_260 Hb_006400_040--Hb_002027_260 Hb_006400_040--Hb_001623_420 Hb_006400_040--Hb_005306_110 Hb_012634_010 Hb_012634_010 Hb_006400_040--Hb_012634_010 Hb_000340_510 Hb_000340_510 Hb_006400_040--Hb_000340_510 Hb_000030_010 Hb_000030_010 Hb_000120_950--Hb_000030_010 Hb_000754_060 Hb_000754_060 Hb_000120_950--Hb_000754_060 Hb_000190_140 Hb_000190_140 Hb_000120_950--Hb_000190_140 Hb_000436_070 Hb_000436_070 Hb_000120_950--Hb_000436_070 Hb_002477_160 Hb_002477_160 Hb_000120_950--Hb_002477_160 Hb_000139_410--Hb_010381_070 Hb_005000_210 Hb_005000_210 Hb_000139_410--Hb_005000_210 Hb_004109_200 Hb_004109_200 Hb_000139_410--Hb_004109_200 Hb_000139_410--Hb_001623_420 Hb_002150_080 Hb_002150_080 Hb_000139_410--Hb_002150_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
246.465 110.135 56.5012 61.5678 217.319 185.277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
212.948 160.18 198.562 92.5666 37.5504

CAGE analysis