Hb_001584_360

Information

Type -
Description -
Location Contig1584: 222722-227662
Sequence    

Annotation

kegg
ID rcu:RCOM_1436590
description Serine/threonine-protein kinase Haspin, putative
nr
ID XP_012088836.1
description PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
swissprot
ID Q2KIP2
description Serine/threonine-protein kinase haspin OS=Bos taurus GN=GSG2 PE=2 SV=1
trembl
ID A0A067JHK6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23175 PE=4 SV=1
Gene Ontology
ID GO:0044424
description serine threonine-protein kinase haspin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14014: 222837-225118 , PASA_asmbl_14015: 225307-227782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_360 0.0 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
2 Hb_000334_120 0.0900706539 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
3 Hb_001688_100 0.1039061689 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
4 Hb_033041_010 0.1051374043 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
5 Hb_005183_150 0.1121080875 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
6 Hb_007632_080 0.1142042125 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
7 Hb_101133_050 0.1159411121 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
8 Hb_003109_010 0.1179576525 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
9 Hb_000028_530 0.1218133008 - - Protein regulator of cytokinesis, putative [Ricinus communis]
10 Hb_010180_030 0.1222844287 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
11 Hb_002311_090 0.1225632391 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
12 Hb_000365_210 0.1236766854 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
13 Hb_000661_150 0.1240356986 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
14 Hb_007632_210 0.1255088128 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
15 Hb_003813_110 0.1269023338 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000500_340 0.1322063867 - - PREDICTED: exonuclease 1 [Jatropha curcas]
17 Hb_000441_210 0.1343002871 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
18 Hb_005276_090 0.1375679154 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
19 Hb_001501_070 0.1383640948 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
20 Hb_010705_040 0.1403593945 - - PREDICTED: kinesin-4 [Jatropha curcas]

Gene co-expression network

sample Hb_001584_360 Hb_001584_360 Hb_000334_120 Hb_000334_120 Hb_001584_360--Hb_000334_120 Hb_001688_100 Hb_001688_100 Hb_001584_360--Hb_001688_100 Hb_033041_010 Hb_033041_010 Hb_001584_360--Hb_033041_010 Hb_005183_150 Hb_005183_150 Hb_001584_360--Hb_005183_150 Hb_007632_080 Hb_007632_080 Hb_001584_360--Hb_007632_080 Hb_101133_050 Hb_101133_050 Hb_001584_360--Hb_101133_050 Hb_000028_530 Hb_000028_530 Hb_000334_120--Hb_000028_530 Hb_000334_120--Hb_033041_010 Hb_000189_350 Hb_000189_350 Hb_000334_120--Hb_000189_350 Hb_000265_100 Hb_000265_100 Hb_000334_120--Hb_000265_100 Hb_005276_090 Hb_005276_090 Hb_000334_120--Hb_005276_090 Hb_000661_150 Hb_000661_150 Hb_001688_100--Hb_000661_150 Hb_001688_100--Hb_101133_050 Hb_080952_060 Hb_080952_060 Hb_001688_100--Hb_080952_060 Hb_001307_150 Hb_001307_150 Hb_001688_100--Hb_001307_150 Hb_001699_270 Hb_001699_270 Hb_001688_100--Hb_001699_270 Hb_001688_100--Hb_005276_090 Hb_033041_010--Hb_007632_080 Hb_033041_010--Hb_005183_150 Hb_033041_010--Hb_101133_050 Hb_033041_010--Hb_000028_530 Hb_033041_010--Hb_005276_090 Hb_007632_210 Hb_007632_210 Hb_005183_150--Hb_007632_210 Hb_003360_010 Hb_003360_010 Hb_005183_150--Hb_003360_010 Hb_001524_120 Hb_001524_120 Hb_005183_150--Hb_001524_120 Hb_005183_150--Hb_007632_080 Hb_124677_050 Hb_124677_050 Hb_005183_150--Hb_124677_050 Hb_003109_010 Hb_003109_010 Hb_007632_080--Hb_003109_010 Hb_007632_080--Hb_000028_530 Hb_007632_080--Hb_101133_050 Hb_007632_080--Hb_000334_120 Hb_002311_090 Hb_002311_090 Hb_101133_050--Hb_002311_090 Hb_101133_050--Hb_001307_150 Hb_007474_020 Hb_007474_020 Hb_101133_050--Hb_007474_020 Hb_016898_020 Hb_016898_020 Hb_101133_050--Hb_016898_020 Hb_000317_120 Hb_000317_120 Hb_101133_050--Hb_000317_120 Hb_101133_050--Hb_005276_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0609803 0.043929 3.50165 1.61253 0.038973 0.0296083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0697556 0.0731803 0.138671 0.480512 0.231798

CAGE analysis