Hb_001587_010

Information

Type transcription factor
Description TF Family: bHLH
Location Contig1587: 8037-10623
Sequence    

Annotation

kegg
ID pop:POPTR_0001s29400g
description POPTRDRAFT_175654; hypothetical protein
nr
ID XP_012074541.1
description PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
swissprot
ID Q9T072
description Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2
trembl
ID A0A067KLN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09890 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14056: 8641-9331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001587_010 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
2 Hb_002407_080 0.2011046451 - - hypothetical protein JCGZ_00752 [Jatropha curcas]
3 Hb_005273_040 0.2054896895 - - -
4 Hb_002299_050 0.2132097895 - - PREDICTED: chalcone--flavonone isomerase isoform X1 [Pyrus x bretschneideri]
5 Hb_009848_010 0.2199205336 - - putative acyl-activating enzyme 16, chloroplastic -like protein [Gossypium arboreum]
6 Hb_000209_110 0.2199711472 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
7 Hb_003160_020 0.2250127778 - - PREDICTED: uncharacterized protein LOC105639457 [Jatropha curcas]
8 Hb_001524_090 0.225337056 - - PREDICTED: uncharacterized protein LOC105113929 [Populus euphratica]
9 Hb_000384_030 0.245583742 - - PREDICTED: uncharacterized protein LOC101310565 isoform X1 [Fragaria vesca subsp. vesca]
10 Hb_001278_070 0.2466302078 - - hypothetical protein glysoja_020139 [Glycine soja]
11 Hb_002972_020 0.2485639199 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
12 Hb_006586_030 0.2520018443 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
13 Hb_000544_100 0.252071127 - - hypothetical protein JCGZ_03636 [Jatropha curcas]
14 Hb_000283_150 0.2529345621 - - Ankyrin repeat family protein [Theobroma cacao]
15 Hb_002477_220 0.2568451941 - - hypothetical protein POPTR_0017s06650g [Populus trichocarpa]
16 Hb_068804_020 0.2630882144 - - hypothetical protein AMTR_s00046p00231970 [Amborella trichopoda]
17 Hb_001104_240 0.2699874167 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
18 Hb_001507_100 0.2706918522 - - cytochrome P450, putative [Ricinus communis]
19 Hb_002827_020 0.2723384815 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
20 Hb_000984_050 0.2735318034 - - sucrose transporter 5 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001587_010 Hb_001587_010 Hb_002407_080 Hb_002407_080 Hb_001587_010--Hb_002407_080 Hb_005273_040 Hb_005273_040 Hb_001587_010--Hb_005273_040 Hb_002299_050 Hb_002299_050 Hb_001587_010--Hb_002299_050 Hb_009848_010 Hb_009848_010 Hb_001587_010--Hb_009848_010 Hb_000209_110 Hb_000209_110 Hb_001587_010--Hb_000209_110 Hb_003160_020 Hb_003160_020 Hb_001587_010--Hb_003160_020 Hb_004242_190 Hb_004242_190 Hb_002407_080--Hb_004242_190 Hb_003073_180 Hb_003073_180 Hb_002407_080--Hb_003073_180 Hb_002972_020 Hb_002972_020 Hb_002407_080--Hb_002972_020 Hb_001258_060 Hb_001258_060 Hb_002407_080--Hb_001258_060 Hb_000009_620 Hb_000009_620 Hb_002407_080--Hb_000009_620 Hb_002407_080--Hb_005273_040 Hb_005273_040--Hb_002299_050 Hb_001329_240 Hb_001329_240 Hb_005273_040--Hb_001329_240 Hb_001278_070 Hb_001278_070 Hb_005273_040--Hb_001278_070 Hb_005273_040--Hb_000209_110 Hb_065525_030 Hb_065525_030 Hb_002299_050--Hb_065525_030 Hb_000984_050 Hb_000984_050 Hb_002299_050--Hb_000984_050 Hb_002299_050--Hb_001278_070 Hb_002299_050--Hb_002407_080 Hb_009848_030 Hb_009848_030 Hb_009848_010--Hb_009848_030 Hb_002477_220 Hb_002477_220 Hb_009848_010--Hb_002477_220 Hb_012180_030 Hb_012180_030 Hb_009848_010--Hb_012180_030 Hb_002235_140 Hb_002235_140 Hb_009848_010--Hb_002235_140 Hb_000735_170 Hb_000735_170 Hb_009848_010--Hb_000735_170 Hb_000544_100 Hb_000544_100 Hb_000209_110--Hb_000544_100 Hb_000209_110--Hb_003073_180 Hb_006586_030 Hb_006586_030 Hb_000209_110--Hb_006586_030 Hb_000093_150 Hb_000093_150 Hb_000209_110--Hb_000093_150 Hb_004462_010 Hb_004462_010 Hb_000209_110--Hb_004462_010 Hb_000209_110--Hb_002407_080 Hb_001507_100 Hb_001507_100 Hb_003160_020--Hb_001507_100 Hb_003160_020--Hb_004242_190 Hb_001104_240 Hb_001104_240 Hb_003160_020--Hb_001104_240 Hb_003160_020--Hb_002972_020 Hb_002028_220 Hb_002028_220 Hb_003160_020--Hb_002028_220 Hb_028872_060 Hb_028872_060 Hb_003160_020--Hb_028872_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.17565 3.6064 0.523042 1.39914 9.68006 9.40628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.12335 0.698739 0.679355 25.299 1.40063

CAGE analysis