Hb_001587_020

Information

Type -
Description -
Location Contig1587: 14746-20358
Sequence    

Annotation

kegg
ID rcu:RCOM_0816860
description aldo-keto reductase, putative (EC:1.1.1.107)
nr
ID XP_012074544.1
description PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
swissprot
ID O81884
description L-galactose dehydrogenase OS=Arabidopsis thaliana GN=LGALDH PE=1 SV=1
trembl
ID A0A067KVN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09891 PE=4 SV=1
Gene Ontology
ID GO:0005829
description l-galactose dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14058: 18356-19687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001587_020 0.0 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
2 Hb_004951_040 0.0853535981 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
3 Hb_008289_060 0.0907123037 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
4 Hb_011465_040 0.0951598009 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
5 Hb_000030_100 0.0953329978 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
6 Hb_016065_010 0.096395423 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
7 Hb_000923_070 0.0968917927 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003018_200 0.0972829847 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
9 Hb_008453_090 0.0990451818 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
10 Hb_131864_040 0.0990753709 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
11 Hb_003216_100 0.1015704712 - - PREDICTED: uncharacterized protein LOC105641496 [Jatropha curcas]
12 Hb_001863_390 0.1019390513 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
13 Hb_007943_090 0.1019906194 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
14 Hb_000091_090 0.1020776189 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
15 Hb_005488_010 0.1034051165 - - conserved hypothetical protein [Ricinus communis]
16 Hb_055062_030 0.1049011239 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
17 Hb_002028_130 0.1050372087 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
18 Hb_000223_150 0.1086432101 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
19 Hb_000329_310 0.1091185454 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
20 Hb_000376_050 0.1100060107 - - polyadenylate-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001587_020 Hb_001587_020 Hb_004951_040 Hb_004951_040 Hb_001587_020--Hb_004951_040 Hb_008289_060 Hb_008289_060 Hb_001587_020--Hb_008289_060 Hb_011465_040 Hb_011465_040 Hb_001587_020--Hb_011465_040 Hb_000030_100 Hb_000030_100 Hb_001587_020--Hb_000030_100 Hb_016065_010 Hb_016065_010 Hb_001587_020--Hb_016065_010 Hb_000923_070 Hb_000923_070 Hb_001587_020--Hb_000923_070 Hb_008453_090 Hb_008453_090 Hb_004951_040--Hb_008453_090 Hb_004951_040--Hb_008289_060 Hb_055062_030 Hb_055062_030 Hb_004951_040--Hb_055062_030 Hb_003018_200 Hb_003018_200 Hb_004951_040--Hb_003018_200 Hb_000223_150 Hb_000223_150 Hb_004951_040--Hb_000223_150 Hb_005333_130 Hb_005333_130 Hb_004951_040--Hb_005333_130 Hb_008289_060--Hb_000030_100 Hb_008289_060--Hb_055062_030 Hb_007943_090 Hb_007943_090 Hb_008289_060--Hb_007943_090 Hb_000146_020 Hb_000146_020 Hb_008289_060--Hb_000146_020 Hb_002918_200 Hb_002918_200 Hb_008289_060--Hb_002918_200 Hb_005701_020 Hb_005701_020 Hb_011465_040--Hb_005701_020 Hb_011465_040--Hb_000030_100 Hb_009404_020 Hb_009404_020 Hb_011465_040--Hb_009404_020 Hb_000376_050 Hb_000376_050 Hb_011465_040--Hb_000376_050 Hb_011465_040--Hb_002918_200 Hb_000703_140 Hb_000703_140 Hb_011465_040--Hb_000703_140 Hb_000030_100--Hb_002918_200 Hb_000089_160 Hb_000089_160 Hb_000030_100--Hb_000089_160 Hb_003226_280 Hb_003226_280 Hb_000030_100--Hb_003226_280 Hb_001109_020 Hb_001109_020 Hb_000030_100--Hb_001109_020 Hb_000205_270 Hb_000205_270 Hb_016065_010--Hb_000205_270 Hb_005488_010 Hb_005488_010 Hb_016065_010--Hb_005488_010 Hb_016065_010--Hb_008453_090 Hb_016065_010--Hb_055062_030 Hb_009486_130 Hb_009486_130 Hb_016065_010--Hb_009486_130 Hb_000009_160 Hb_000009_160 Hb_016065_010--Hb_000009_160 Hb_000836_070 Hb_000836_070 Hb_000923_070--Hb_000836_070 Hb_000923_070--Hb_000376_050 Hb_002307_030 Hb_002307_030 Hb_000923_070--Hb_002307_030 Hb_001243_050 Hb_001243_050 Hb_000923_070--Hb_001243_050 Hb_000956_010 Hb_000956_010 Hb_000923_070--Hb_000956_010 Hb_003216_100 Hb_003216_100 Hb_000923_070--Hb_003216_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.24598 4.54141 1.74747 0.964401 9.16222 9.87125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4944 18.9134 15.2489 4.48701 2.44485

CAGE analysis