Hb_001587_060

Information

Type -
Description -
Location Contig1587: 44215-44448
Sequence    

Annotation

kegg
ID rcu:RCOM_0816820
description hypothetical protein
nr
ID XP_002518300.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RX31
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0816820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14060: 43942-44468
cDNA
(Sanger)
(ID:Location)		 001_P13.ab1: 43942-44468 , 028_C10.ab1: 43944-44464 , 036_G12.ab1: 43957-44468 , 047_I21.ab1: 44029-44468

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001587_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000009_040 0.1169305344 - - -
3 Hb_000345_430 0.14055167 - - 40S ribosomal protein S24A [Hevea brasiliensis]
4 Hb_009659_020 0.1409742735 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
5 Hb_000236_460 0.1413115744 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
6 Hb_030565_040 0.1441637325 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
7 Hb_007520_060 0.1498901512 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
8 Hb_015978_070 0.1537977127 - - -
9 Hb_103752_010 0.1540084936 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
10 Hb_030954_020 0.1569766205 - - hypothetical protein RCOM_1330200 [Ricinus communis]
11 Hb_080477_060 0.1574167111 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001575_030 0.1590736257 - - hypothetical protein POPTR_0022s00880g [Populus trichocarpa]
13 Hb_001623_430 0.1670291779 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
14 Hb_187083_010 0.1681780576 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
15 Hb_005137_020 0.1692865855 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
16 Hb_003349_070 0.1703411233 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
17 Hb_003549_020 0.1722099384 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001123_120 0.1723762134 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
19 Hb_005463_060 0.1729929095 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
20 Hb_002260_020 0.1732596819 - - -

Gene co-expression network

sample Hb_001587_060 Hb_001587_060 Hb_000009_040 Hb_000009_040 Hb_001587_060--Hb_000009_040 Hb_000345_430 Hb_000345_430 Hb_001587_060--Hb_000345_430 Hb_009659_020 Hb_009659_020 Hb_001587_060--Hb_009659_020 Hb_000236_460 Hb_000236_460 Hb_001587_060--Hb_000236_460 Hb_030565_040 Hb_030565_040 Hb_001587_060--Hb_030565_040 Hb_007520_060 Hb_007520_060 Hb_001587_060--Hb_007520_060 Hb_017711_010 Hb_017711_010 Hb_000009_040--Hb_017711_010 Hb_000009_040--Hb_000236_460 Hb_003058_220 Hb_003058_220 Hb_000009_040--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_000009_040--Hb_005224_050 Hb_002293_030 Hb_002293_030 Hb_000009_040--Hb_002293_030 Hb_000345_430--Hb_009659_020 Hb_015978_070 Hb_015978_070 Hb_000345_430--Hb_015978_070 Hb_129204_010 Hb_129204_010 Hb_000345_430--Hb_129204_010 Hb_012305_120 Hb_012305_120 Hb_000345_430--Hb_012305_120 Hb_000345_430--Hb_007520_060 Hb_030954_020 Hb_030954_020 Hb_009659_020--Hb_030954_020 Hb_009659_020--Hb_007520_060 Hb_080477_060 Hb_080477_060 Hb_009659_020--Hb_080477_060 Hb_001623_430 Hb_001623_430 Hb_009659_020--Hb_001623_430 Hb_000820_130 Hb_000820_130 Hb_009659_020--Hb_000820_130 Hb_003549_020 Hb_003549_020 Hb_000236_460--Hb_003549_020 Hb_187083_010 Hb_187083_010 Hb_000236_460--Hb_187083_010 Hb_021409_090 Hb_021409_090 Hb_000236_460--Hb_021409_090 Hb_097007_010 Hb_097007_010 Hb_000236_460--Hb_097007_010 Hb_000085_330 Hb_000085_330 Hb_000236_460--Hb_000085_330 Hb_001123_120 Hb_001123_120 Hb_000236_460--Hb_001123_120 Hb_004333_030 Hb_004333_030 Hb_030565_040--Hb_004333_030 Hb_030565_040--Hb_007520_060 Hb_002320_060 Hb_002320_060 Hb_030565_040--Hb_002320_060 Hb_000318_490 Hb_000318_490 Hb_030565_040--Hb_000318_490 Hb_030565_040--Hb_187083_010 Hb_030565_040--Hb_000236_460 Hb_006541_020 Hb_006541_020 Hb_007520_060--Hb_006541_020 Hb_006718_010 Hb_006718_010 Hb_007520_060--Hb_006718_010 Hb_000367_210 Hb_000367_210 Hb_007520_060--Hb_000367_210 Hb_000419_130 Hb_000419_130 Hb_007520_060--Hb_000419_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
378.392 20.1052 9.93775 368.265 184.272 810.587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1582.24 2792.12 557.726 170.647 4.80929

CAGE analysis