Hb_001587_070

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1587: 53119-56676
Sequence    

Annotation

kegg
ID tcc:TCM_034588
description Nbs-lrr resistance protein, putative
nr
ID XP_007018351.1
description Nbs-lrr resistance protein, putative [Theobroma cacao]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID M0ZTX7
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003104 PE=4 SV=1
Gene Ontology
ID GO:0005515
description nbs-lrr resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14062: 52134-53081
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001587_070 0.0 desease resistance Gene Name: NB-ARC Nbs-lrr resistance protein, putative [Theobroma cacao]
2 Hb_000539_030 0.1127229279 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase diphosphomevelonate decarboxylase [Hevea brasiliensis]
3 Hb_162275_030 0.1278947025 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
4 Hb_003849_100 0.1303387463 - - PREDICTED: putative transcription elongation factor SPT5 homolog 1 [Populus euphratica]
5 Hb_006472_050 0.1328385709 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
6 Hb_003732_010 0.1331839082 - - hypothetical protein CHLNCDRAFT_58243 [Chlorella variabilis]
7 Hb_003687_150 0.1334177047 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
8 Hb_001153_060 0.1342007303 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001863_480 0.1399523979 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
10 Hb_012423_050 0.1399804684 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
11 Hb_001762_060 0.1403414186 - - pantothenate kinase, putative [Ricinus communis]
12 Hb_011457_090 0.1413826306 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
13 Hb_005375_020 0.1414900577 - - PREDICTED: endoribonuclease Dicer homolog 1-like [Nicotiana sylvestris]
14 Hb_000840_210 0.1449408979 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
15 Hb_008544_010 0.1476192997 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
16 Hb_000496_060 0.1487833653 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
17 Hb_000329_180 0.1515967895 - - Auxin-induced protein X10A, putative [Ricinus communis]
18 Hb_171554_080 0.1520890419 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
19 Hb_002735_060 0.1525869173 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
20 Hb_001006_180 0.1539781989 - - PREDICTED: endonuclease V-like [Jatropha curcas]

Gene co-expression network

sample Hb_001587_070 Hb_001587_070 Hb_000539_030 Hb_000539_030 Hb_001587_070--Hb_000539_030 Hb_162275_030 Hb_162275_030 Hb_001587_070--Hb_162275_030 Hb_003849_100 Hb_003849_100 Hb_001587_070--Hb_003849_100 Hb_006472_050 Hb_006472_050 Hb_001587_070--Hb_006472_050 Hb_003732_010 Hb_003732_010 Hb_001587_070--Hb_003732_010 Hb_003687_150 Hb_003687_150 Hb_001587_070--Hb_003687_150 Hb_000539_030--Hb_162275_030 Hb_012423_050 Hb_012423_050 Hb_000539_030--Hb_012423_050 Hb_001006_180 Hb_001006_180 Hb_000539_030--Hb_001006_180 Hb_004738_010 Hb_004738_010 Hb_000539_030--Hb_004738_010 Hb_000907_090 Hb_000907_090 Hb_000539_030--Hb_000907_090 Hb_162275_030--Hb_001006_180 Hb_001762_060 Hb_001762_060 Hb_162275_030--Hb_001762_060 Hb_002735_060 Hb_002735_060 Hb_162275_030--Hb_002735_060 Hb_002119_120 Hb_002119_120 Hb_162275_030--Hb_002119_120 Hb_007382_150 Hb_007382_150 Hb_162275_030--Hb_007382_150 Hb_000069_550 Hb_000069_550 Hb_162275_030--Hb_000069_550 Hb_000243_080 Hb_000243_080 Hb_003849_100--Hb_000243_080 Hb_003849_100--Hb_003687_150 Hb_005569_020 Hb_005569_020 Hb_003849_100--Hb_005569_020 Hb_006711_060 Hb_006711_060 Hb_003849_100--Hb_006711_060 Hb_000046_100 Hb_000046_100 Hb_003849_100--Hb_000046_100 Hb_002182_030 Hb_002182_030 Hb_006472_050--Hb_002182_030 Hb_001135_210 Hb_001135_210 Hb_006472_050--Hb_001135_210 Hb_000963_180 Hb_000963_180 Hb_006472_050--Hb_000963_180 Hb_000224_120 Hb_000224_120 Hb_006472_050--Hb_000224_120 Hb_000046_290 Hb_000046_290 Hb_006472_050--Hb_000046_290 Hb_001153_060 Hb_001153_060 Hb_006472_050--Hb_001153_060 Hb_001833_110 Hb_001833_110 Hb_003732_010--Hb_001833_110 Hb_004965_070 Hb_004965_070 Hb_003732_010--Hb_004965_070 Hb_001360_050 Hb_001360_050 Hb_003732_010--Hb_001360_050 Hb_117134_010 Hb_117134_010 Hb_003732_010--Hb_117134_010 Hb_004724_340 Hb_004724_340 Hb_003732_010--Hb_004724_340 Hb_000053_100 Hb_000053_100 Hb_003732_010--Hb_000053_100 Hb_027073_050 Hb_027073_050 Hb_003687_150--Hb_027073_050 Hb_008544_010 Hb_008544_010 Hb_003687_150--Hb_008544_010 Hb_002016_100 Hb_002016_100 Hb_003687_150--Hb_002016_100 Hb_003687_150--Hb_162275_030 Hb_001080_280 Hb_001080_280 Hb_003687_150--Hb_001080_280 Hb_001904_090 Hb_001904_090 Hb_003687_150--Hb_001904_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.255557 0.103726 0.133911 0.257644 0.136226 0.508231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.08958 0.428726 1.07808 0.162339 0.203854

CAGE analysis