Hb_001587_180

Information

Type -
Description -
Location Contig1587: 101219-104147
Sequence    

Annotation

kegg
ID pop:POPTR_0001s29320g
description POPTRDRAFT_707507; hypothetical protein
nr
ID XP_012074564.1
description PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
swissprot
ID Q9C5C8
description Peptide methionine sulfoxide reductase B2, chloroplastic OS=Arabidopsis thaliana GN=MSRB2 PE=1 SV=1
trembl
ID A0A067KVP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09906 PE=4 SV=1
Gene Ontology
ID GO:0033743
description peptide methionine sulfoxide reductase b5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14064: 101193-104147
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001587_180 0.0 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
2 Hb_001900_140 0.0644125213 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
3 Hb_001287_040 0.0827492049 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
4 Hb_000003_780 0.0849834155 - - hexokinase [Manihot esculenta]
5 Hb_005946_040 0.0884804202 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
6 Hb_001935_100 0.0910128578 - - structural molecule, putative [Ricinus communis]
7 Hb_001541_110 0.091052899 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_007002_020 0.0931650915 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
9 Hb_003747_230 0.09326762 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
10 Hb_000537_100 0.0952019499 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
11 Hb_002631_240 0.0960313945 - - JHL17M24.3 [Jatropha curcas]
12 Hb_007558_090 0.0988668456 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_019053_060 0.1002744244 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
14 Hb_001410_070 0.1004413681 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
15 Hb_002759_190 0.1007040623 - - PREDICTED: protein NLRC3 [Jatropha curcas]
16 Hb_029622_120 0.1007320111 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
17 Hb_000122_190 0.1013983161 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
18 Hb_006907_060 0.1019691098 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
19 Hb_000487_260 0.1031005325 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
20 Hb_005494_010 0.1039390236 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_001587_180 Hb_001587_180 Hb_001900_140 Hb_001900_140 Hb_001587_180--Hb_001900_140 Hb_001287_040 Hb_001287_040 Hb_001587_180--Hb_001287_040 Hb_000003_780 Hb_000003_780 Hb_001587_180--Hb_000003_780 Hb_005946_040 Hb_005946_040 Hb_001587_180--Hb_005946_040 Hb_001935_100 Hb_001935_100 Hb_001587_180--Hb_001935_100 Hb_001541_110 Hb_001541_110 Hb_001587_180--Hb_001541_110 Hb_006132_090 Hb_006132_090 Hb_001900_140--Hb_006132_090 Hb_007558_090 Hb_007558_090 Hb_001900_140--Hb_007558_090 Hb_003266_030 Hb_003266_030 Hb_001900_140--Hb_003266_030 Hb_007904_230 Hb_007904_230 Hb_001900_140--Hb_007904_230 Hb_001900_140--Hb_005946_040 Hb_007002_020 Hb_007002_020 Hb_001287_040--Hb_007002_020 Hb_001287_040--Hb_006132_090 Hb_003124_150 Hb_003124_150 Hb_001287_040--Hb_003124_150 Hb_000811_070 Hb_000811_070 Hb_001287_040--Hb_000811_070 Hb_001287_040--Hb_001900_140 Hb_002631_240 Hb_002631_240 Hb_000003_780--Hb_002631_240 Hb_000003_780--Hb_005946_040 Hb_002874_180 Hb_002874_180 Hb_000003_780--Hb_002874_180 Hb_000003_780--Hb_007002_020 Hb_000003_780--Hb_001900_140 Hb_000537_100 Hb_000537_100 Hb_005946_040--Hb_000537_100 Hb_005162_110 Hb_005162_110 Hb_005946_040--Hb_005162_110 Hb_002876_300 Hb_002876_300 Hb_005946_040--Hb_002876_300 Hb_029622_120 Hb_029622_120 Hb_005946_040--Hb_029622_120 Hb_005946_040--Hb_002631_240 Hb_005946_040--Hb_007558_090 Hb_000051_060 Hb_000051_060 Hb_001935_100--Hb_000051_060 Hb_000227_170 Hb_000227_170 Hb_001935_100--Hb_000227_170 Hb_005539_010 Hb_005539_010 Hb_001935_100--Hb_005539_010 Hb_001410_070 Hb_001410_070 Hb_001935_100--Hb_001410_070 Hb_000796_160 Hb_000796_160 Hb_001935_100--Hb_000796_160 Hb_001935_100--Hb_005946_040 Hb_007451_040 Hb_007451_040 Hb_001541_110--Hb_007451_040 Hb_001541_110--Hb_000003_780 Hb_000413_060 Hb_000413_060 Hb_001541_110--Hb_000413_060 Hb_001863_120 Hb_001863_120 Hb_001541_110--Hb_001863_120 Hb_000926_080 Hb_000926_080 Hb_001541_110--Hb_000926_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.2391 55.9588 173.227 64.6663 41.3116 31.5295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.1771 86.9752 68.3996 43.1376 148.729

CAGE analysis