Hb_001587_190

Information

Type -
Description -
Location Contig1587: 105423-114880
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa023432mg
description hypothetical protein
nr
ID XP_012435466.1
description PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC105762101

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14067: 105901-109213 , PASA_asmbl_14070: 110132-114824
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001587_190 0.0 - - PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
2 Hb_000709_060 0.1250816126 - - PREDICTED: abscisic-aldehyde oxidase-like isoform X5 [Populus euphratica]
3 Hb_004108_080 0.1639999304 - - PREDICTED: endo-1,3;1,4-beta-D-glucanase [Vitis vinifera]
4 Hb_005329_020 0.1646986224 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
5 Hb_001248_050 0.1760071627 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
6 Hb_000329_650 0.1806836227 - - hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]
7 Hb_009158_030 0.1817849111 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
8 Hb_000085_270 0.1821258971 - - PREDICTED: pirin-like protein [Malus domestica]
9 Hb_000877_060 0.1822518052 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
10 Hb_005056_060 0.1825104203 - - PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Jatropha curcas]
11 Hb_012052_060 0.1873328617 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
12 Hb_001959_040 0.187705695 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
13 Hb_102465_010 0.1881431748 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
14 Hb_000270_440 0.1886577006 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
15 Hb_000329_630 0.1941410083 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
16 Hb_000395_080 0.1952351997 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
17 Hb_000078_180 0.1969946224 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
18 Hb_004607_150 0.2005930576 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
19 Hb_000446_030 0.2012189456 - - amino acid binding protein, putative [Ricinus communis]
20 Hb_000503_050 0.2019472758 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Gossypium raimondii]

Gene co-expression network

sample Hb_001587_190 Hb_001587_190 Hb_000709_060 Hb_000709_060 Hb_001587_190--Hb_000709_060 Hb_004108_080 Hb_004108_080 Hb_001587_190--Hb_004108_080 Hb_005329_020 Hb_005329_020 Hb_001587_190--Hb_005329_020 Hb_001248_050 Hb_001248_050 Hb_001587_190--Hb_001248_050 Hb_000329_650 Hb_000329_650 Hb_001587_190--Hb_000329_650 Hb_009158_030 Hb_009158_030 Hb_001587_190--Hb_009158_030 Hb_000709_060--Hb_004108_080 Hb_003893_090 Hb_003893_090 Hb_000709_060--Hb_003893_090 Hb_102465_010 Hb_102465_010 Hb_000709_060--Hb_102465_010 Hb_089685_010 Hb_089685_010 Hb_000709_060--Hb_089685_010 Hb_000442_100 Hb_000442_100 Hb_000709_060--Hb_000442_100 Hb_005056_060 Hb_005056_060 Hb_004108_080--Hb_005056_060 Hb_000567_030 Hb_000567_030 Hb_004108_080--Hb_000567_030 Hb_008554_020 Hb_008554_020 Hb_004108_080--Hb_008554_020 Hb_004310_030 Hb_004310_030 Hb_004108_080--Hb_004310_030 Hb_000446_030 Hb_000446_030 Hb_004108_080--Hb_000446_030 Hb_004108_080--Hb_005329_020 Hb_000696_340 Hb_000696_340 Hb_005329_020--Hb_000696_340 Hb_000329_630 Hb_000329_630 Hb_005329_020--Hb_000329_630 Hb_000571_120 Hb_000571_120 Hb_005329_020--Hb_000571_120 Hb_000395_080 Hb_000395_080 Hb_005329_020--Hb_000395_080 Hb_005329_020--Hb_005056_060 Hb_000877_060 Hb_000877_060 Hb_005329_020--Hb_000877_060 Hb_004221_010 Hb_004221_010 Hb_001248_050--Hb_004221_010 Hb_001248_050--Hb_000877_060 Hb_000085_270 Hb_000085_270 Hb_001248_050--Hb_000085_270 Hb_001138_050 Hb_001138_050 Hb_001248_050--Hb_001138_050 Hb_004109_200 Hb_004109_200 Hb_001248_050--Hb_004109_200 Hb_000483_350 Hb_000483_350 Hb_001248_050--Hb_000483_350 Hb_000329_650--Hb_000329_630 Hb_000923_050 Hb_000923_050 Hb_000329_650--Hb_000923_050 Hb_000329_650--Hb_000696_340 Hb_000329_650--Hb_005329_020 Hb_000329_650--Hb_005056_060 Hb_002333_080 Hb_002333_080 Hb_000329_650--Hb_002333_080 Hb_009158_030--Hb_005056_060 Hb_002232_170 Hb_002232_170 Hb_009158_030--Hb_002232_170 Hb_009158_030--Hb_000395_080 Hb_005565_030 Hb_005565_030 Hb_009158_030--Hb_005565_030 Hb_009158_030--Hb_004221_010 Hb_009158_030--Hb_004310_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.2898 12.6557 2.23474 2.71469 1.34926 15.733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.6653 14.2334 10.9654 9.40086 3.13565

CAGE analysis