Hb_001587_220

Information

Type -
Description -
Location Contig1587: 150811-154397
Sequence    

Annotation

kegg
ID rcu:RCOM_0586540
description receptor protein kinase, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_002522985.1
description receptor protein kinase, putative [Ricinus communis]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID B9SAG6
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_0586540 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14072: 150648-150910
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001587_220 0.0 - - receptor protein kinase, putative [Ricinus communis]
2 Hb_006573_060 0.0706388606 - - hypothetical protein [Bruguiera gymnorhiza]
3 Hb_000702_040 0.1029159402 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
4 Hb_005892_010 0.1078096569 - - PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]
5 Hb_011101_010 0.108394239 - - hypothetical protein JCGZ_25132 [Jatropha curcas]
6 Hb_004586_230 0.1089858113 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000137_030 0.1138735529 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Citrus sinensis]
8 Hb_050898_010 0.1186003209 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
9 Hb_003939_090 0.1256601118 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
10 Hb_000922_290 0.1266381384 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
11 Hb_015884_010 0.1291321945 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
12 Hb_000365_190 0.1308441816 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
13 Hb_000497_170 0.131110671 - - PREDICTED: uncharacterized protein LOC105647275 [Jatropha curcas]
14 Hb_000732_100 0.1322219934 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
15 Hb_001195_650 0.1366303284 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
16 Hb_008352_020 0.136763926 - - hypothetical protein [Cecembia lonarensis]
17 Hb_189034_010 0.1380110957 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000537_090 0.1386954074 - - conserved hypothetical protein [Ricinus communis]
19 Hb_103541_010 0.1409491578 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
20 Hb_010642_010 0.1413618652 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]

Gene co-expression network

sample Hb_001587_220 Hb_001587_220 Hb_006573_060 Hb_006573_060 Hb_001587_220--Hb_006573_060 Hb_000702_040 Hb_000702_040 Hb_001587_220--Hb_000702_040 Hb_005892_010 Hb_005892_010 Hb_001587_220--Hb_005892_010 Hb_011101_010 Hb_011101_010 Hb_001587_220--Hb_011101_010 Hb_004586_230 Hb_004586_230 Hb_001587_220--Hb_004586_230 Hb_000137_030 Hb_000137_030 Hb_001587_220--Hb_000137_030 Hb_005389_090 Hb_005389_090 Hb_006573_060--Hb_005389_090 Hb_000991_110 Hb_000991_110 Hb_006573_060--Hb_000991_110 Hb_006573_060--Hb_000702_040 Hb_006573_060--Hb_004586_230 Hb_003939_090 Hb_003939_090 Hb_006573_060--Hb_003939_090 Hb_001610_050 Hb_001610_050 Hb_000702_040--Hb_001610_050 Hb_000702_040--Hb_004586_230 Hb_002639_120 Hb_002639_120 Hb_000702_040--Hb_002639_120 Hb_006890_050 Hb_006890_050 Hb_000702_040--Hb_006890_050 Hb_000702_040--Hb_005892_010 Hb_000922_290 Hb_000922_290 Hb_005892_010--Hb_000922_290 Hb_050898_010 Hb_050898_010 Hb_005892_010--Hb_050898_010 Hb_005892_010--Hb_001610_050 Hb_005892_010--Hb_000137_030 Hb_000365_190 Hb_000365_190 Hb_011101_010--Hb_000365_190 Hb_123078_010 Hb_123078_010 Hb_011101_010--Hb_123078_010 Hb_004218_290 Hb_004218_290 Hb_011101_010--Hb_004218_290 Hb_002267_030 Hb_002267_030 Hb_011101_010--Hb_002267_030 Hb_000252_190 Hb_000252_190 Hb_011101_010--Hb_000252_190 Hb_012395_260 Hb_012395_260 Hb_004586_230--Hb_012395_260 Hb_004586_230--Hb_000365_190 Hb_001195_650 Hb_001195_650 Hb_004586_230--Hb_001195_650 Hb_189034_010 Hb_189034_010 Hb_000137_030--Hb_189034_010 Hb_000723_060 Hb_000723_060 Hb_000137_030--Hb_000723_060 Hb_000137_030--Hb_050898_010 Hb_183209_020 Hb_183209_020 Hb_000137_030--Hb_183209_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.24646 0.254722 1.20572 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0120149 0 0.219273 0.179283

CAGE analysis