Hb_001589_010

Information

Type -
Description -
Location Contig1589: 59180-96749
Sequence    

Annotation

kegg
ID rcu:RCOM_0799020
description hypothetical protein
nr
ID XP_012077344.1
description PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
swissprot
ID B9RRX2
description Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ricinus communis GN=GATC PE=3 SV=1
trembl
ID A0A067KDD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07713 PE=4 SV=1
Gene Ontology
ID GO:0006450
description PREDICTED: uncharacterized protein LOC105638192 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14105: 70650-70845 , PASA_asmbl_14106: 70875-72575 , PASA_asmbl_14107: 75312-76964
cDNA
(Sanger)
(ID:Location)		 011_F05.ab1: 75494-76962 , 041_P06.ab1: 75495-76962

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001589_010 0.0 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
2 Hb_002205_230 0.0751375491 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
3 Hb_000720_050 0.0792882028 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
4 Hb_001936_090 0.0813009552 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
5 Hb_005116_050 0.0827620208 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_001789_110 0.0837549528 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_004450_040 0.0848011613 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
8 Hb_002758_010 0.0851892508 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
9 Hb_000007_010 0.0886489952 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
10 Hb_000749_010 0.0898074006 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
11 Hb_188281_040 0.0900022572 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
12 Hb_000317_050 0.0908502833 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
13 Hb_000482_190 0.0912456378 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
14 Hb_005276_200 0.0914046457 - - PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Jatropha curcas]
15 Hb_000230_400 0.0922914259 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000059_380 0.0932289075 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
17 Hb_001377_190 0.0934957144 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
18 Hb_005253_030 0.0956998582 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001008_120 0.0991885872 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
20 Hb_003517_040 0.0995693611 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001589_010 Hb_001589_010 Hb_002205_230 Hb_002205_230 Hb_001589_010--Hb_002205_230 Hb_000720_050 Hb_000720_050 Hb_001589_010--Hb_000720_050 Hb_001936_090 Hb_001936_090 Hb_001589_010--Hb_001936_090 Hb_005116_050 Hb_005116_050 Hb_001589_010--Hb_005116_050 Hb_001789_110 Hb_001789_110 Hb_001589_010--Hb_001789_110 Hb_004450_040 Hb_004450_040 Hb_001589_010--Hb_004450_040 Hb_000749_010 Hb_000749_010 Hb_002205_230--Hb_000749_010 Hb_000059_380 Hb_000059_380 Hb_002205_230--Hb_000059_380 Hb_000599_270 Hb_000599_270 Hb_002205_230--Hb_000599_270 Hb_021374_030 Hb_021374_030 Hb_002205_230--Hb_021374_030 Hb_000797_040 Hb_000797_040 Hb_002205_230--Hb_000797_040 Hb_000720_050--Hb_001789_110 Hb_188281_040 Hb_188281_040 Hb_000720_050--Hb_188281_040 Hb_001008_120 Hb_001008_120 Hb_000720_050--Hb_001008_120 Hb_000441_090 Hb_000441_090 Hb_000720_050--Hb_000441_090 Hb_000720_050--Hb_001936_090 Hb_000789_200 Hb_000789_200 Hb_000720_050--Hb_000789_200 Hb_029584_070 Hb_029584_070 Hb_001936_090--Hb_029584_070 Hb_002758_010 Hb_002758_010 Hb_001936_090--Hb_002758_010 Hb_000130_320 Hb_000130_320 Hb_001936_090--Hb_000130_320 Hb_001936_090--Hb_188281_040 Hb_001347_060 Hb_001347_060 Hb_001936_090--Hb_001347_060 Hb_000130_220 Hb_000130_220 Hb_005116_050--Hb_000130_220 Hb_001157_240 Hb_001157_240 Hb_005116_050--Hb_001157_240 Hb_000482_040 Hb_000482_040 Hb_005116_050--Hb_000482_040 Hb_001163_060 Hb_001163_060 Hb_005116_050--Hb_001163_060 Hb_008033_040 Hb_008033_040 Hb_005116_050--Hb_008033_040 Hb_005736_020 Hb_005736_020 Hb_005116_050--Hb_005736_020 Hb_027073_020 Hb_027073_020 Hb_001789_110--Hb_027073_020 Hb_003517_040 Hb_003517_040 Hb_001789_110--Hb_003517_040 Hb_007413_010 Hb_007413_010 Hb_001789_110--Hb_007413_010 Hb_122968_010 Hb_122968_010 Hb_001789_110--Hb_122968_010 Hb_001789_110--Hb_188281_040 Hb_006913_020 Hb_006913_020 Hb_001789_110--Hb_006913_020 Hb_000075_040 Hb_000075_040 Hb_004450_040--Hb_000075_040 Hb_000462_170 Hb_000462_170 Hb_004450_040--Hb_000462_170 Hb_001946_400 Hb_001946_400 Hb_004450_040--Hb_001946_400 Hb_001021_150 Hb_001021_150 Hb_004450_040--Hb_001021_150 Hb_001301_150 Hb_001301_150 Hb_004450_040--Hb_001301_150 Hb_000708_030 Hb_000708_030 Hb_004450_040--Hb_000708_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.746233 0.994093 0.7165 0.701545 0.734044 0.576539
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.936836 0.967746 0.534732 0.874015 1.69925

CAGE analysis