Hb_001591_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig1591: 14037-15727
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05200g
description POPTRDRAFT_661734; hypothetical protein
nr
ID AFM77857.1
description myb domain protein [Hevea brasiliensis]
swissprot
ID Q9LDE1
description Transcription factor MYB108 OS=Arabidopsis thaliana GN=MYB108 PE=1 SV=1
trembl
ID K7PMP7
description Myb domain protein OS=Hevea brasiliensis GN=MYB2 PE=2 SV=1
Gene Ontology
ID GO:0003677
description myb domain protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14127: 14075-15678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001591_010 0.0 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
2 Hb_000139_420 0.2199231318 - - Stem-specific protein TSJT1, putative [Ricinus communis]
3 Hb_000390_270 0.2541631269 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000612_040 0.2600240831 - - hypothetical protein OsJ_16945 [Oryza sativa Japonica Group]
5 Hb_000289_070 0.2671991151 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003750_030 0.2690891077 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
7 Hb_000134_320 0.2712688609 - - hypothetical protein PRUPE_ppa013450mg [Prunus persica]
8 Hb_150930_010 0.2717603744 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009880_010 0.2745322809 - - PREDICTED: cytochrome c [Jatropha curcas]
10 Hb_002701_190 0.2745360609 - - PREDICTED: uncharacterized protein LOC105646742 [Jatropha curcas]
11 Hb_009680_040 0.277357288 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_001449_100 0.2776296245 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
13 Hb_000230_150 0.2800089754 - - sugar transporter, putative [Ricinus communis]
14 Hb_028271_020 0.2877756719 - - acyl-CoA oxidase, putative [Ricinus communis]
15 Hb_000154_040 0.2883901075 - - hypothetical protein JCGZ_25602 [Jatropha curcas]
16 Hb_000331_640 0.2906593148 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
17 Hb_001789_050 0.2917825047 - - 60S ribosomal protein L36-2 [Morus notabilis]
18 Hb_002235_080 0.2941854952 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
19 Hb_000788_010 0.2959709301 - - 40S ribosomal protein S16A [Hevea brasiliensis]
20 Hb_002686_180 0.2963018242 - - PREDICTED: early nodulin-93-like [Populus euphratica]

Gene co-expression network

sample Hb_001591_010 Hb_001591_010 Hb_000139_420 Hb_000139_420 Hb_001591_010--Hb_000139_420 Hb_000390_270 Hb_000390_270 Hb_001591_010--Hb_000390_270 Hb_000612_040 Hb_000612_040 Hb_001591_010--Hb_000612_040 Hb_000289_070 Hb_000289_070 Hb_001591_010--Hb_000289_070 Hb_003750_030 Hb_003750_030 Hb_001591_010--Hb_003750_030 Hb_000134_320 Hb_000134_320 Hb_001591_010--Hb_000134_320 Hb_000331_640 Hb_000331_640 Hb_000139_420--Hb_000331_640 Hb_000086_230 Hb_000086_230 Hb_000139_420--Hb_000086_230 Hb_000258_350 Hb_000258_350 Hb_000139_420--Hb_000258_350 Hb_009265_090 Hb_009265_090 Hb_000139_420--Hb_009265_090 Hb_011671_440 Hb_011671_440 Hb_000139_420--Hb_011671_440 Hb_114893_030 Hb_114893_030 Hb_000139_420--Hb_114893_030 Hb_002701_010 Hb_002701_010 Hb_000390_270--Hb_002701_010 Hb_000009_050 Hb_000009_050 Hb_000390_270--Hb_000009_050 Hb_007017_010 Hb_007017_010 Hb_000390_270--Hb_007017_010 Hb_004712_210 Hb_004712_210 Hb_000390_270--Hb_004712_210 Hb_002307_310 Hb_002307_310 Hb_000390_270--Hb_002307_310 Hb_006355_040 Hb_006355_040 Hb_000390_270--Hb_006355_040 Hb_150930_010 Hb_150930_010 Hb_000612_040--Hb_150930_010 Hb_007553_020 Hb_007553_020 Hb_000612_040--Hb_007553_020 Hb_005144_070 Hb_005144_070 Hb_000612_040--Hb_005144_070 Hb_001449_010 Hb_001449_010 Hb_000612_040--Hb_001449_010 Hb_000923_090 Hb_000923_090 Hb_000612_040--Hb_000923_090 Hb_004871_020 Hb_004871_020 Hb_000612_040--Hb_004871_020 Hb_002811_090 Hb_002811_090 Hb_000289_070--Hb_002811_090 Hb_027472_160 Hb_027472_160 Hb_000289_070--Hb_027472_160 Hb_002909_130 Hb_002909_130 Hb_000289_070--Hb_002909_130 Hb_000788_010 Hb_000788_010 Hb_000289_070--Hb_000788_010 Hb_009880_010 Hb_009880_010 Hb_000289_070--Hb_009880_010 Hb_003057_020 Hb_003057_020 Hb_000289_070--Hb_003057_020 Hb_080147_100 Hb_080147_100 Hb_003750_030--Hb_080147_100 Hb_004208_130 Hb_004208_130 Hb_003750_030--Hb_004208_130 Hb_003226_160 Hb_003226_160 Hb_003750_030--Hb_003226_160 Hb_000116_420 Hb_000116_420 Hb_003750_030--Hb_000116_420 Hb_002798_010 Hb_002798_010 Hb_003750_030--Hb_002798_010 Hb_003750_030--Hb_000139_420 Hb_132840_140 Hb_132840_140 Hb_000134_320--Hb_132840_140 Hb_001754_250 Hb_001754_250 Hb_000134_320--Hb_001754_250 Hb_002686_180 Hb_002686_180 Hb_000134_320--Hb_002686_180 Hb_003053_010 Hb_003053_010 Hb_000134_320--Hb_003053_010 Hb_000260_550 Hb_000260_550 Hb_000134_320--Hb_000260_550 Hb_002811_170 Hb_002811_170 Hb_000134_320--Hb_002811_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.0934 2.93784 11.8173 4.28167 0.252907 1.33419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.37234 48.7096 6.31655 20.1397 1.41711

CAGE analysis