Hb_001595_030

Information

Type -
Description -
Location Contig1595: 32785-35536
Sequence    

Annotation

kegg
ID rcu:RCOM_0882630
description nuclear inhibitor of protein phosphatase-1, putative
nr
ID XP_012074819.1
description PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
swissprot
ID Q12972
description Nuclear inhibitor of protein phosphatase 1 OS=Homo sapiens GN=PPP1R8 PE=1 SV=2
trembl
ID A0A067KUL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08977 PE=4 SV=1
Gene Ontology
ID GO:0016787
description nuclear inhibitor of protein phosphatase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14181: 32889-35522 , PASA_asmbl_14182: 32957-35523
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001595_030 0.0 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
2 Hb_000879_200 0.0549076678 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
3 Hb_036790_100 0.0562813123 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
4 Hb_000038_170 0.0573721528 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
5 Hb_000327_120 0.059204593 - - FGFR1 oncogene partner, putative [Ricinus communis]
6 Hb_002603_120 0.0609680654 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
7 Hb_006185_050 0.0613144968 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
8 Hb_001258_090 0.0613826833 - - PREDICTED: protein spt2-like [Jatropha curcas]
9 Hb_008803_090 0.063447472 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
10 Hb_001926_030 0.0635929953 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
11 Hb_001242_060 0.0636473133 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
12 Hb_096563_010 0.0639876453 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
13 Hb_011671_430 0.0661151195 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
14 Hb_003464_050 0.0665949449 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
15 Hb_007416_180 0.0670999195 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
16 Hb_000030_300 0.0675262557 - - Thioredoxin, putative [Ricinus communis]
17 Hb_031527_040 0.0675968045 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
18 Hb_000853_420 0.0700596321 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_001252_010 0.0701112755 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
20 Hb_054865_100 0.0702363875 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001595_030 Hb_001595_030 Hb_000879_200 Hb_000879_200 Hb_001595_030--Hb_000879_200 Hb_036790_100 Hb_036790_100 Hb_001595_030--Hb_036790_100 Hb_000038_170 Hb_000038_170 Hb_001595_030--Hb_000038_170 Hb_000327_120 Hb_000327_120 Hb_001595_030--Hb_000327_120 Hb_002603_120 Hb_002603_120 Hb_001595_030--Hb_002603_120 Hb_006185_050 Hb_006185_050 Hb_001595_030--Hb_006185_050 Hb_001926_030 Hb_001926_030 Hb_000879_200--Hb_001926_030 Hb_006620_020 Hb_006620_020 Hb_000879_200--Hb_006620_020 Hb_000853_230 Hb_000853_230 Hb_000879_200--Hb_000853_230 Hb_002518_280 Hb_002518_280 Hb_000879_200--Hb_002518_280 Hb_023386_020 Hb_023386_020 Hb_000879_200--Hb_023386_020 Hb_000403_050 Hb_000403_050 Hb_036790_100--Hb_000403_050 Hb_001242_060 Hb_001242_060 Hb_036790_100--Hb_001242_060 Hb_002256_030 Hb_002256_030 Hb_036790_100--Hb_002256_030 Hb_001258_090 Hb_001258_090 Hb_036790_100--Hb_001258_090 Hb_000416_040 Hb_000416_040 Hb_036790_100--Hb_000416_040 Hb_000038_170--Hb_002518_280 Hb_011671_430 Hb_011671_430 Hb_000038_170--Hb_011671_430 Hb_003428_030 Hb_003428_030 Hb_000038_170--Hb_003428_030 Hb_000038_170--Hb_000879_200 Hb_001006_140 Hb_001006_140 Hb_000038_170--Hb_001006_140 Hb_002685_140 Hb_002685_140 Hb_000327_120--Hb_002685_140 Hb_007951_060 Hb_007951_060 Hb_000327_120--Hb_007951_060 Hb_001635_170 Hb_001635_170 Hb_000327_120--Hb_001635_170 Hb_054865_100 Hb_054865_100 Hb_000327_120--Hb_054865_100 Hb_000327_120--Hb_006185_050 Hb_000853_420 Hb_000853_420 Hb_002603_120--Hb_000853_420 Hb_000030_300 Hb_000030_300 Hb_002603_120--Hb_000030_300 Hb_000629_010 Hb_000629_010 Hb_002603_120--Hb_000629_010 Hb_005188_050 Hb_005188_050 Hb_002603_120--Hb_005188_050 Hb_004491_010 Hb_004491_010 Hb_002603_120--Hb_004491_010 Hb_001305_010 Hb_001305_010 Hb_006185_050--Hb_001305_010 Hb_000392_300 Hb_000392_300 Hb_006185_050--Hb_000392_300 Hb_000089_220 Hb_000089_220 Hb_006185_050--Hb_000089_220 Hb_003175_010 Hb_003175_010 Hb_006185_050--Hb_003175_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.7956 28.0897 19.8783 17.8796 37.0783 38.8436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.8511 35.0911 33.2496 19.3665 16.8736

CAGE analysis