Hb_001595_040

Information

Type -
Description -
Location Contig1595: 87413-93476
Sequence    

Annotation

kegg
ID rcu:RCOM_0881890
description Root phototropism protein, putative
nr
ID XP_002525040.1
description Root phototropism protein, putative [Ricinus communis]
swissprot
ID Q9FIK1
description BTB/POZ domain-containing protein At5g47800 OS=Arabidopsis thaliana GN=At5g47800 PE=2 SV=1
trembl
ID B9SGC1
description Root phototropism protein, putative OS=Ricinus communis GN=RCOM_0881890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14184: 90285-91196 , PASA_asmbl_14185: 91419-91934 , PASA_asmbl_14186: 92350-92614
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001595_040 0.0 - - Root phototropism protein, putative [Ricinus communis]
2 Hb_001935_090 0.1374833945 - - PREDICTED: uncharacterized protein LOC105643180 isoform X1 [Jatropha curcas]
3 Hb_003029_060 0.1823952825 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
4 Hb_003102_030 0.1847153271 - - PREDICTED: uncharacterized protein LOC105644418 [Jatropha curcas]
5 Hb_000011_070 0.1929935681 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
6 Hb_000422_130 0.1949095642 - - hypothetical protein JCGZ_15217 [Jatropha curcas]
7 Hb_000963_050 0.2016855849 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
8 Hb_000914_050 0.2041178016 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
9 Hb_083493_010 0.2041877583 - - Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_011671_280 0.2069868159 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF106-like [Populus euphratica]
11 Hb_003929_190 0.2118171909 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
12 Hb_004631_170 0.2127048638 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005941_030 0.2139071274 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
14 Hb_000274_050 0.2196107727 - - Squalene monooxygenase, putative [Ricinus communis]
15 Hb_187021_010 0.2198061464 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
16 Hb_002897_010 0.2203873913 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
17 Hb_000599_330 0.2246135028 - - hypothetical protein JCGZ_17661 [Jatropha curcas]
18 Hb_000776_040 0.2253344891 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X3 [Jatropha curcas]
19 Hb_000654_050 0.2270590935 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
20 Hb_002026_020 0.2290573414 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_001595_040 Hb_001595_040 Hb_001935_090 Hb_001935_090 Hb_001595_040--Hb_001935_090 Hb_003029_060 Hb_003029_060 Hb_001595_040--Hb_003029_060 Hb_003102_030 Hb_003102_030 Hb_001595_040--Hb_003102_030 Hb_000011_070 Hb_000011_070 Hb_001595_040--Hb_000011_070 Hb_000422_130 Hb_000422_130 Hb_001595_040--Hb_000422_130 Hb_000963_050 Hb_000963_050 Hb_001595_040--Hb_000963_050 Hb_000849_050 Hb_000849_050 Hb_001935_090--Hb_000849_050 Hb_000242_030 Hb_000242_030 Hb_001935_090--Hb_000242_030 Hb_001935_090--Hb_003102_030 Hb_000050_140 Hb_000050_140 Hb_001935_090--Hb_000050_140 Hb_025964_040 Hb_025964_040 Hb_001935_090--Hb_025964_040 Hb_003929_190 Hb_003929_190 Hb_003029_060--Hb_003929_190 Hb_005941_030 Hb_005941_030 Hb_003029_060--Hb_005941_030 Hb_009838_020 Hb_009838_020 Hb_003029_060--Hb_009838_020 Hb_014497_040 Hb_014497_040 Hb_003029_060--Hb_014497_040 Hb_000071_160 Hb_000071_160 Hb_003029_060--Hb_000071_160 Hb_000977_290 Hb_000977_290 Hb_003029_060--Hb_000977_290 Hb_007044_160 Hb_007044_160 Hb_003102_030--Hb_007044_160 Hb_003102_030--Hb_005941_030 Hb_000914_050 Hb_000914_050 Hb_003102_030--Hb_000914_050 Hb_003102_030--Hb_000071_160 Hb_003102_030--Hb_000011_070 Hb_002374_550 Hb_002374_550 Hb_003102_030--Hb_002374_550 Hb_000349_200 Hb_000349_200 Hb_000011_070--Hb_000349_200 Hb_000271_220 Hb_000271_220 Hb_000011_070--Hb_000271_220 Hb_000603_020 Hb_000603_020 Hb_000011_070--Hb_000603_020 Hb_011828_010 Hb_011828_010 Hb_000011_070--Hb_011828_010 Hb_003929_230 Hb_003929_230 Hb_000011_070--Hb_003929_230 Hb_000011_070--Hb_000071_160 Hb_000818_100 Hb_000818_100 Hb_000422_130--Hb_000818_100 Hb_000422_130--Hb_003029_060 Hb_003605_040 Hb_003605_040 Hb_000422_130--Hb_003605_040 Hb_187021_010 Hb_187021_010 Hb_000422_130--Hb_187021_010 Hb_000422_130--Hb_003929_190 Hb_000274_050 Hb_000274_050 Hb_000963_050--Hb_000274_050 Hb_012286_060 Hb_012286_060 Hb_000963_050--Hb_012286_060 Hb_001188_050 Hb_001188_050 Hb_000963_050--Hb_001188_050 Hb_020805_040 Hb_020805_040 Hb_000963_050--Hb_020805_040 Hb_143629_120 Hb_143629_120 Hb_000963_050--Hb_143629_120 Hb_118283_010 Hb_118283_010 Hb_000963_050--Hb_118283_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46014 1.52558 3.51365 5.39417 0.059712 1.4203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0788576 0 0 0.597992 1.48023

CAGE analysis