Hb_001595_080

Information

Type -
Description -
Location Contig1595: 144092-147702
Sequence    

Annotation

kegg
ID rcu:RCOM_0881710
description hypothetical protein
nr
ID XP_002525033.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6DBA5
description DNA-directed RNA polymerases IV and V subunit 4 OS=Arabidopsis thaliana GN=NRPD4 PE=1 SV=2
trembl
ID B9SGB4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0881710 PE=4 SV=1
Gene Ontology
ID GO:0000418
description dna-directed rna polymerases iv and v subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14187: 143908-145712
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001595_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002518_120 0.1312761525 - - hypothetical protein RCOM_0731250 [Ricinus communis]
3 Hb_032920_050 0.1367876639 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
4 Hb_003994_110 0.1383392182 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
5 Hb_002304_070 0.1396450314 - - -
6 Hb_000256_200 0.141891631 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001951_180 0.1441460079 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_003544_010 0.1487891231 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_036790_080 0.1488919379 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
10 Hb_005253_030 0.1497814053 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002811_010 0.1508662323 - - cysteine synthase, putative [Ricinus communis]
12 Hb_000613_110 0.1522271688 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
13 Hb_001117_200 0.1526394389 transcription factor TF Family: SWI/SNF-BAF60b conserved hypothetical protein [Ricinus communis]
14 Hb_002188_120 0.1559884157 - - PREDICTED: thymocyte nuclear protein 1 [Pyrus x bretschneideri]
15 Hb_000130_320 0.1583198639 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
16 Hb_153533_010 0.1586821178 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X3 [Jatropha curcas]
17 Hb_003106_190 0.1598219125 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
18 Hb_001824_090 0.1607954373 - - -
19 Hb_005731_160 0.1608056045 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_007922_020 0.1624544649 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]

Gene co-expression network

sample Hb_001595_080 Hb_001595_080 Hb_002518_120 Hb_002518_120 Hb_001595_080--Hb_002518_120 Hb_032920_050 Hb_032920_050 Hb_001595_080--Hb_032920_050 Hb_003994_110 Hb_003994_110 Hb_001595_080--Hb_003994_110 Hb_002304_070 Hb_002304_070 Hb_001595_080--Hb_002304_070 Hb_000256_200 Hb_000256_200 Hb_001595_080--Hb_000256_200 Hb_001951_180 Hb_001951_180 Hb_001595_080--Hb_001951_180 Hb_000010_290 Hb_000010_290 Hb_002518_120--Hb_000010_290 Hb_032258_010 Hb_032258_010 Hb_002518_120--Hb_032258_010 Hb_015026_080 Hb_015026_080 Hb_002518_120--Hb_015026_080 Hb_002282_070 Hb_002282_070 Hb_002518_120--Hb_002282_070 Hb_003475_020 Hb_003475_020 Hb_002518_120--Hb_003475_020 Hb_030131_030 Hb_030131_030 Hb_002518_120--Hb_030131_030 Hb_036790_080 Hb_036790_080 Hb_032920_050--Hb_036790_080 Hb_000130_320 Hb_000130_320 Hb_032920_050--Hb_000130_320 Hb_000613_110 Hb_000613_110 Hb_032920_050--Hb_000613_110 Hb_000479_250 Hb_000479_250 Hb_032920_050--Hb_000479_250 Hb_032920_050--Hb_003994_110 Hb_007101_080 Hb_007101_080 Hb_032920_050--Hb_007101_080 Hb_003544_010 Hb_003544_010 Hb_003994_110--Hb_003544_010 Hb_003994_110--Hb_003475_020 Hb_003994_110--Hb_000613_110 Hb_001824_090 Hb_001824_090 Hb_003994_110--Hb_001824_090 Hb_003106_190 Hb_003106_190 Hb_003994_110--Hb_003106_190 Hb_003467_030 Hb_003467_030 Hb_002304_070--Hb_003467_030 Hb_001010_070 Hb_001010_070 Hb_002304_070--Hb_001010_070 Hb_011386_020 Hb_011386_020 Hb_002304_070--Hb_011386_020 Hb_002338_050 Hb_002338_050 Hb_002304_070--Hb_002338_050 Hb_007023_030 Hb_007023_030 Hb_002304_070--Hb_007023_030 Hb_000270_290 Hb_000270_290 Hb_000256_200--Hb_000270_290 Hb_000703_270 Hb_000703_270 Hb_000256_200--Hb_000703_270 Hb_002188_120 Hb_002188_120 Hb_000256_200--Hb_002188_120 Hb_003747_060 Hb_003747_060 Hb_000256_200--Hb_003747_060 Hb_002481_060 Hb_002481_060 Hb_000256_200--Hb_002481_060 Hb_002276_020 Hb_002276_020 Hb_001951_180--Hb_002276_020 Hb_001951_180--Hb_036790_080 Hb_011316_090 Hb_011316_090 Hb_001951_180--Hb_011316_090 Hb_005253_030 Hb_005253_030 Hb_001951_180--Hb_005253_030 Hb_000261_060 Hb_000261_060 Hb_001951_180--Hb_000261_060 Hb_153533_010 Hb_153533_010 Hb_001951_180--Hb_153533_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.413485 0.347355 0.51553 0.533377 0.856603 1.31776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40699 0.703446 0.513762 1.37496 2.83613

CAGE analysis