Hb_001596_020

Information

Type -
Description -
Location Contig1596: 25967-31313
Sequence    

Annotation

kegg
ID rcu:RCOM_0487910
description aconitase, putative (EC:4.2.1.3)
nr
ID XP_006447555.1
description hypothetical protein CICLE_v10014140mg [Citrus clementina]
swissprot
ID P49608
description Aconitate hydratase, cytoplasmic OS=Cucurbita maxima PE=2 SV=1
trembl
ID V4U9I2
description Aconitate hydratase OS=Citrus clementina GN=CICLE_v10014140mg PE=3 SV=1
Gene Ontology
ID GO:0008152
description aconitate cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14197: 27871-28089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001596_020 0.0 - - hypothetical protein CICLE_v10014140mg [Citrus clementina]
2 Hb_006831_080 0.1011233962 - - PREDICTED: uncharacterized protein LOC105642126 [Jatropha curcas]
3 Hb_001856_170 0.1030393614 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
4 Hb_000120_310 0.1091572807 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
5 Hb_001369_160 0.1213609347 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
6 Hb_004586_240 0.1268237654 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
7 Hb_001178_080 0.1301271514 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]
8 Hb_005504_030 0.1308503307 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
9 Hb_000465_260 0.1317080708 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
10 Hb_006949_060 0.1329172961 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
11 Hb_000085_380 0.1350060898 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001832_210 0.135526564 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
13 Hb_002833_020 0.1364617459 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
14 Hb_000950_040 0.1427751536 - - cation-transporting atpase plant, putative [Ricinus communis]
15 Hb_001898_060 0.1434777443 - - conserved hypothetical protein [Ricinus communis]
16 Hb_115513_040 0.1468014506 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001008_110 0.1475002968 - - -
18 Hb_033363_010 0.1476807456 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
19 Hb_000997_340 0.1487374144 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
20 Hb_001522_040 0.1501343089 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001596_020 Hb_001596_020 Hb_006831_080 Hb_006831_080 Hb_001596_020--Hb_006831_080 Hb_001856_170 Hb_001856_170 Hb_001596_020--Hb_001856_170 Hb_000120_310 Hb_000120_310 Hb_001596_020--Hb_000120_310 Hb_001369_160 Hb_001369_160 Hb_001596_020--Hb_001369_160 Hb_004586_240 Hb_004586_240 Hb_001596_020--Hb_004586_240 Hb_001178_080 Hb_001178_080 Hb_001596_020--Hb_001178_080 Hb_006831_080--Hb_001856_170 Hb_006831_080--Hb_000120_310 Hb_006831_080--Hb_004586_240 Hb_001141_230 Hb_001141_230 Hb_006831_080--Hb_001141_230 Hb_001832_210 Hb_001832_210 Hb_006831_080--Hb_001832_210 Hb_001856_170--Hb_000120_310 Hb_001856_170--Hb_004586_240 Hb_001856_170--Hb_001369_160 Hb_000009_140 Hb_000009_140 Hb_001856_170--Hb_000009_140 Hb_000120_310--Hb_001369_160 Hb_001488_280 Hb_001488_280 Hb_000120_310--Hb_001488_280 Hb_002833_020 Hb_002833_020 Hb_000120_310--Hb_002833_020 Hb_000120_310--Hb_004586_240 Hb_002662_090 Hb_002662_090 Hb_001369_160--Hb_002662_090 Hb_002447_150 Hb_002447_150 Hb_001369_160--Hb_002447_150 Hb_003894_100 Hb_003894_100 Hb_001369_160--Hb_003894_100 Hb_005504_030 Hb_005504_030 Hb_004586_240--Hb_005504_030 Hb_004586_240--Hb_000009_140 Hb_004586_240--Hb_001369_160 Hb_005016_020 Hb_005016_020 Hb_001178_080--Hb_005016_020 Hb_012727_010 Hb_012727_010 Hb_001178_080--Hb_012727_010 Hb_000000_110 Hb_000000_110 Hb_001178_080--Hb_000000_110 Hb_006949_060 Hb_006949_060 Hb_001178_080--Hb_006949_060 Hb_017159_010 Hb_017159_010 Hb_001178_080--Hb_017159_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.55694 3.87501 2.47606 3.77858 0.194911 0.56633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.555884 0.262433 0.0663779 3.5146 1.36859

CAGE analysis