Hb_001596_030

Information

Type -
Description -
Location Contig1596: 38925-39320
Sequence    

Annotation

kegg
ID rcu:RCOM_0487800
description hypothetical protein
nr
ID XP_011047269.1
description PREDICTED: uncharacterized protein LOC105141672 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A0D2SHC7
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G149800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001596_030 0.0 - - PREDICTED: uncharacterized protein LOC105141672 [Populus euphratica]
2 Hb_081282_010 0.0932752959 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
3 Hb_000306_050 0.1027520986 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
4 Hb_021418_010 0.1067560035 - - PREDICTED: probable pectate lyase 12 [Prunus mume]
5 Hb_001242_020 0.1085042852 - - hypothetical protein JCGZ_08334 [Jatropha curcas]
6 Hb_000540_030 0.1114499847 - - Chitinase 1 precursor, putative [Ricinus communis]
7 Hb_020805_110 0.1138866284 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
8 Hb_003090_230 0.121205308 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000676_380 0.1220635962 - - cytochrome P450 family protein [Populus trichocarpa]
10 Hb_009711_040 0.1249020689 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
11 Hb_014865_010 0.1279904209 - - hypothetical protein PRUPE_ppa017366mg, partial [Prunus persica]
12 Hb_001522_050 0.1373720033 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Jatropha curcas]
13 Hb_014115_010 0.1377655266 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_003171_070 0.1409364006 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
15 Hb_161346_010 0.1432643728 - - PREDICTED: germin-like protein subfamily 1 member 20 [Populus euphratica]
16 Hb_046191_010 0.1434888845 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000417_350 0.1458606033 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003469_030 0.1492811356 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
19 Hb_009780_110 0.1503536085 - - PREDICTED: protein RSI-1 [Cicer arietinum]
20 Hb_000380_210 0.1514312696 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]

Gene co-expression network

sample Hb_001596_030 Hb_001596_030 Hb_081282_010 Hb_081282_010 Hb_001596_030--Hb_081282_010 Hb_000306_050 Hb_000306_050 Hb_001596_030--Hb_000306_050 Hb_021418_010 Hb_021418_010 Hb_001596_030--Hb_021418_010 Hb_001242_020 Hb_001242_020 Hb_001596_030--Hb_001242_020 Hb_000540_030 Hb_000540_030 Hb_001596_030--Hb_000540_030 Hb_020805_110 Hb_020805_110 Hb_001596_030--Hb_020805_110 Hb_081282_010--Hb_021418_010 Hb_003090_230 Hb_003090_230 Hb_081282_010--Hb_003090_230 Hb_161346_010 Hb_161346_010 Hb_081282_010--Hb_161346_010 Hb_000676_380 Hb_000676_380 Hb_081282_010--Hb_000676_380 Hb_081282_010--Hb_000540_030 Hb_014115_010 Hb_014115_010 Hb_000306_050--Hb_014115_010 Hb_000306_050--Hb_020805_110 Hb_009711_040 Hb_009711_040 Hb_000306_050--Hb_009711_040 Hb_000836_250 Hb_000836_250 Hb_000306_050--Hb_000836_250 Hb_000297_220 Hb_000297_220 Hb_000306_050--Hb_000297_220 Hb_000077_450 Hb_000077_450 Hb_021418_010--Hb_000077_450 Hb_011452_020 Hb_011452_020 Hb_021418_010--Hb_011452_020 Hb_007181_080 Hb_007181_080 Hb_021418_010--Hb_007181_080 Hb_021418_010--Hb_003090_230 Hb_014865_010 Hb_014865_010 Hb_001242_020--Hb_014865_010 Hb_002437_010 Hb_002437_010 Hb_001242_020--Hb_002437_010 Hb_001242_020--Hb_000540_030 Hb_001633_120 Hb_001633_120 Hb_001242_020--Hb_001633_120 Hb_009780_110 Hb_009780_110 Hb_001242_020--Hb_009780_110 Hb_002301_420 Hb_002301_420 Hb_000540_030--Hb_002301_420 Hb_098030_010 Hb_098030_010 Hb_000540_030--Hb_098030_010 Hb_000540_030--Hb_021418_010 Hb_012368_080 Hb_012368_080 Hb_000540_030--Hb_012368_080 Hb_020805_110--Hb_000676_380 Hb_020805_110--Hb_009711_040 Hb_004875_040 Hb_004875_040 Hb_020805_110--Hb_004875_040 Hb_020805_110--Hb_003090_230 Hb_001856_150 Hb_001856_150 Hb_020805_110--Hb_001856_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.182582 0.145247 1.35336 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.91853 0

CAGE analysis