Hb_001596_040

Information

Type -
Description -
Location Contig1596: 64904-66593
Sequence    

Annotation

kegg
ID pop:POPTR_0001s45530g
description POPTRDRAFT_550470; eugenol O-methyltransferase family protein
nr
ID XP_011038013.1
description PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
swissprot
ID Q43609
description Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1
trembl
ID B9GJ54
description Eugenol O-methyltransferase family protein OS=Populus trichocarpa GN=POPTR_0001s45530g PE=4 SV=1
Gene Ontology
ID GO:0008171
description caffeic acid 3-o-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14200: 64889-66487 , PASA_asmbl_14201: 64901-66502
cDNA
(Sanger)
(ID:Location)		 021_M06.ab1: 64889-65957 , 045_I01.ab1: 64889-65943

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001596_040 0.0 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
2 Hb_002171_070 0.0969002949 desease resistance Gene Name: NB-ARC NBS-LRR resistance gene-like protein ARGH30 [Populus trichocarpa]
3 Hb_012019_020 0.1072068168 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
4 Hb_002917_030 0.1121792409 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
5 Hb_003086_200 0.1164498328 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
6 Hb_004931_060 0.1169423689 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
7 Hb_000556_200 0.1188041161 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
8 Hb_001952_110 0.1217846428 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
9 Hb_000043_080 0.1226102034 - - lipid binding protein, putative [Ricinus communis]
10 Hb_008020_010 0.1236771998 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Jatropha curcas]
11 Hb_001489_030 0.1274227922 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
12 Hb_000462_020 0.1275007316 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_001013_040 0.1297341375 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
14 Hb_000101_050 0.1313067393 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
15 Hb_008503_020 0.1328374077 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
16 Hb_000300_570 0.1344082462 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
17 Hb_186298_010 0.1346192248 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000265_010 0.1349138179 - - amino acid transporter, putative [Ricinus communis]
19 Hb_002917_020 0.1351823159 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
20 Hb_002400_250 0.1355395884 - - amino acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001596_040 Hb_001596_040 Hb_002171_070 Hb_002171_070 Hb_001596_040--Hb_002171_070 Hb_012019_020 Hb_012019_020 Hb_001596_040--Hb_012019_020 Hb_002917_030 Hb_002917_030 Hb_001596_040--Hb_002917_030 Hb_003086_200 Hb_003086_200 Hb_001596_040--Hb_003086_200 Hb_004931_060 Hb_004931_060 Hb_001596_040--Hb_004931_060 Hb_000556_200 Hb_000556_200 Hb_001596_040--Hb_000556_200 Hb_001013_040 Hb_001013_040 Hb_002171_070--Hb_001013_040 Hb_002171_070--Hb_012019_020 Hb_002171_070--Hb_000556_200 Hb_000462_020 Hb_000462_020 Hb_002171_070--Hb_000462_020 Hb_002269_030 Hb_002269_030 Hb_002171_070--Hb_002269_030 Hb_012019_020--Hb_001013_040 Hb_000101_050 Hb_000101_050 Hb_012019_020--Hb_000101_050 Hb_001952_110 Hb_001952_110 Hb_012019_020--Hb_001952_110 Hb_007875_070 Hb_007875_070 Hb_012019_020--Hb_007875_070 Hb_006452_050 Hb_006452_050 Hb_012019_020--Hb_006452_050 Hb_008020_010 Hb_008020_010 Hb_002917_030--Hb_008020_010 Hb_001489_030 Hb_001489_030 Hb_002917_030--Hb_001489_030 Hb_002917_020 Hb_002917_020 Hb_002917_030--Hb_002917_020 Hb_000043_080 Hb_000043_080 Hb_002917_030--Hb_000043_080 Hb_012053_030 Hb_012053_030 Hb_002917_030--Hb_012053_030 Hb_002007_230 Hb_002007_230 Hb_003086_200--Hb_002007_230 Hb_000265_010 Hb_000265_010 Hb_003086_200--Hb_000265_010 Hb_005797_030 Hb_005797_030 Hb_003086_200--Hb_005797_030 Hb_003086_200--Hb_000043_080 Hb_000300_570 Hb_000300_570 Hb_003086_200--Hb_000300_570 Hb_003086_200--Hb_012053_030 Hb_011628_030 Hb_011628_030 Hb_004931_060--Hb_011628_030 Hb_047163_010 Hb_047163_010 Hb_004931_060--Hb_047163_010 Hb_186298_010 Hb_186298_010 Hb_004931_060--Hb_186298_010 Hb_004931_060--Hb_002917_020 Hb_005550_070 Hb_005550_070 Hb_004931_060--Hb_005550_070 Hb_059162_010 Hb_059162_010 Hb_004931_060--Hb_059162_010 Hb_008503_020 Hb_008503_020 Hb_000556_200--Hb_008503_020 Hb_000556_200--Hb_000043_080 Hb_000556_200--Hb_002007_230 Hb_000556_200--Hb_003086_200 Hb_000556_200--Hb_001489_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.116848 171.54 34.2895 14.3809 0.20008 1.14231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.664056 0.435322 0.379387 296.211 8.02214

CAGE analysis