Hb_001597_090

Information

Type -
Description -
Location Contig1597: 165606-168187
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID K4D0E9
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc10g049930.1 PE=4 SV=1
Gene Ontology
ID GO:0004061
description cyclase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14210: 165741-186347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001597_090 0.0 - - -
2 Hb_007676_060 0.0715935892 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
3 Hb_146930_010 0.0946592502 - - -
4 Hb_001288_050 0.1112017689 - - -
5 Hb_000751_050 0.1142451748 - - PREDICTED: extensin, partial [Solanum lycopersicum]
6 Hb_000751_070 0.1263559715 - - -
7 Hb_001571_020 0.1355886726 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
8 Hb_029727_010 0.1416010785 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_000169_100 0.1455713616 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
10 Hb_000567_150 0.1493482399 - - cysteine protease, putative [Ricinus communis]
11 Hb_025668_020 0.1574468039 - - conserved hypothetical protein [Ricinus communis]
12 Hb_135554_010 0.1620930356 - - Insulin-degrading enzyme, putative [Ricinus communis]
13 Hb_000009_430 0.162375551 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001005_040 0.1659771253 - - -
15 Hb_078081_020 0.1661265993 - - -
16 Hb_000751_060 0.1700162581 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
17 Hb_000330_120 0.170381702 - - PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Nelumbo nucifera]
18 Hb_000675_040 0.1709773846 - - hypothetical protein OsI_02937 [Oryza sativa Indica Group]
19 Hb_145211_010 0.1714327587 - - hypothetical protein M569_05648, partial [Genlisea aurea]
20 Hb_009230_020 0.1734774609 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001597_090 Hb_001597_090 Hb_007676_060 Hb_007676_060 Hb_001597_090--Hb_007676_060 Hb_146930_010 Hb_146930_010 Hb_001597_090--Hb_146930_010 Hb_001288_050 Hb_001288_050 Hb_001597_090--Hb_001288_050 Hb_000751_050 Hb_000751_050 Hb_001597_090--Hb_000751_050 Hb_000751_070 Hb_000751_070 Hb_001597_090--Hb_000751_070 Hb_001571_020 Hb_001571_020 Hb_001597_090--Hb_001571_020 Hb_170878_060 Hb_170878_060 Hb_007676_060--Hb_170878_060 Hb_007676_060--Hb_146930_010 Hb_000675_040 Hb_000675_040 Hb_007676_060--Hb_000675_040 Hb_000169_100 Hb_000169_100 Hb_007676_060--Hb_000169_100 Hb_007676_060--Hb_001288_050 Hb_146930_010--Hb_000751_050 Hb_146930_010--Hb_000751_070 Hb_000751_060 Hb_000751_060 Hb_146930_010--Hb_000751_060 Hb_000645_250 Hb_000645_250 Hb_146930_010--Hb_000645_250 Hb_000567_150 Hb_000567_150 Hb_001288_050--Hb_000567_150 Hb_001005_040 Hb_001005_040 Hb_001288_050--Hb_001005_040 Hb_001288_050--Hb_000751_070 Hb_001288_050--Hb_001571_020 Hb_002016_130 Hb_002016_130 Hb_001288_050--Hb_002016_130 Hb_005550_040 Hb_005550_040 Hb_000751_050--Hb_005550_040 Hb_078081_020 Hb_078081_020 Hb_000751_050--Hb_078081_020 Hb_001949_010 Hb_001949_010 Hb_000751_050--Hb_001949_010 Hb_178703_010 Hb_178703_010 Hb_000751_050--Hb_178703_010 Hb_000751_070--Hb_000567_150 Hb_060152_010 Hb_060152_010 Hb_000751_070--Hb_060152_010 Hb_000751_070--Hb_000645_250 Hb_000751_070--Hb_000751_060 Hb_008144_010 Hb_008144_010 Hb_001571_020--Hb_008144_010 Hb_001571_020--Hb_001005_040 Hb_000465_180 Hb_000465_180 Hb_001571_020--Hb_000465_180 Hb_009230_020 Hb_009230_020 Hb_001571_020--Hb_009230_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.593626 0.747188 2.43064 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 10.1398 8.6267

CAGE analysis