Hb_001599_030

Information

Type -
Description -
Location Contig1599: 119400-134156
Sequence    

Annotation

kegg
ID rcu:RCOM_0771810
description valyl-tRNA synthetase, putative (EC:6.1.1.9)
nr
ID XP_012078515.1
description PREDICTED: valine--tRNA ligase [Jatropha curcas]
swissprot
ID P93736
description Valine--tRNA ligase OS=Arabidopsis thaliana GN=VALRS PE=2 SV=2
trembl
ID A0A067K8S9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13191 PE=3 SV=1
Gene Ontology
ID GO:0005737
description valyl-trna synthetase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14257: 119531-134020 , PASA_asmbl_14258: 119533-134093 , PASA_asmbl_14259: 120080-120261
cDNA
(Sanger)
(ID:Location)		 029_M03.ab1: 122403-123104 , 032_K13.ab1: 122470-123104

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001599_030 0.0 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
2 Hb_001235_200 0.056240834 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000320_200 0.0573359892 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
4 Hb_003544_100 0.0595123584 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
5 Hb_010381_060 0.0617886968 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
6 Hb_002749_110 0.0635967736 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
7 Hb_009411_010 0.0658164564 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
8 Hb_000714_050 0.0673242129 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
9 Hb_000025_110 0.067755191 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
10 Hb_010193_050 0.0682608284 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000574_440 0.06838277 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
12 Hb_006449_050 0.0688454808 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
13 Hb_003018_130 0.0727365072 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
14 Hb_007307_020 0.0729525473 - - DNA binding protein, putative [Ricinus communis]
15 Hb_048476_180 0.0729977209 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
16 Hb_002255_050 0.0742712513 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
17 Hb_001444_010 0.0752435448 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
18 Hb_000679_130 0.0759017573 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_006831_110 0.0771337492 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
20 Hb_002909_050 0.0775106448 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001599_030 Hb_001599_030 Hb_001235_200 Hb_001235_200 Hb_001599_030--Hb_001235_200 Hb_000320_200 Hb_000320_200 Hb_001599_030--Hb_000320_200 Hb_003544_100 Hb_003544_100 Hb_001599_030--Hb_003544_100 Hb_010381_060 Hb_010381_060 Hb_001599_030--Hb_010381_060 Hb_002749_110 Hb_002749_110 Hb_001599_030--Hb_002749_110 Hb_009411_010 Hb_009411_010 Hb_001599_030--Hb_009411_010 Hb_000714_050 Hb_000714_050 Hb_001235_200--Hb_000714_050 Hb_000035_040 Hb_000035_040 Hb_001235_200--Hb_000035_040 Hb_001235_200--Hb_010381_060 Hb_001235_200--Hb_000320_200 Hb_007558_120 Hb_007558_120 Hb_001235_200--Hb_007558_120 Hb_002221_050 Hb_002221_050 Hb_000320_200--Hb_002221_050 Hb_000320_200--Hb_000714_050 Hb_000072_350 Hb_000072_350 Hb_000320_200--Hb_000072_350 Hb_003952_150 Hb_003952_150 Hb_000320_200--Hb_003952_150 Hb_000743_040 Hb_000743_040 Hb_000320_200--Hb_000743_040 Hb_003544_100--Hb_009411_010 Hb_003938_080 Hb_003938_080 Hb_003544_100--Hb_003938_080 Hb_006915_060 Hb_006915_060 Hb_003544_100--Hb_006915_060 Hb_003544_100--Hb_000320_200 Hb_003216_080 Hb_003216_080 Hb_003544_100--Hb_003216_080 Hb_003464_020 Hb_003464_020 Hb_010381_060--Hb_003464_020 Hb_010381_060--Hb_000714_050 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_000023_190 Hb_000023_190 Hb_010381_060--Hb_000023_190 Hb_009627_010 Hb_009627_010 Hb_010381_060--Hb_009627_010 Hb_000152_260 Hb_000152_260 Hb_002749_110--Hb_000152_260 Hb_002093_030 Hb_002093_030 Hb_002749_110--Hb_002093_030 Hb_001473_090 Hb_001473_090 Hb_002749_110--Hb_001473_090 Hb_000107_400 Hb_000107_400 Hb_002749_110--Hb_000107_400 Hb_003126_100 Hb_003126_100 Hb_002749_110--Hb_003126_100 Hb_000101_240 Hb_000101_240 Hb_009411_010--Hb_000101_240 Hb_009411_010--Hb_003938_080 Hb_001797_050 Hb_001797_050 Hb_009411_010--Hb_001797_050 Hb_048476_180 Hb_048476_180 Hb_009411_010--Hb_048476_180 Hb_000502_050 Hb_000502_050 Hb_009411_010--Hb_000502_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.9731 27.162 23.9907 20.6319 51.7738 56.6027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.3719 20.6833 30.1338 26.98 30.9459

CAGE analysis