Hb_001599_040

Information

Type -
Description -
Location Contig1599: 139937-146886
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07280g
description POPTRDRAFT_652849; hypothetical protein
nr
ID XP_012077880.1
description PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
swissprot
ID P41777
description Nucleolar and coiled-body phosphoprotein 1 OS=Rattus norvegicus GN=Nolc1 PE=1 SV=1
trembl
ID A0A067KMR3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13588 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14260: 140011-140120 , PASA_asmbl_14261: 140126-144026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001599_040 0.0 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
2 Hb_002303_070 0.0525740398 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
3 Hb_001946_400 0.0602449736 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
4 Hb_006831_140 0.0614163341 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
5 Hb_005730_120 0.0616265964 - - PREDICTED: protein WHI4 [Jatropha curcas]
6 Hb_000640_170 0.0616829842 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
7 Hb_007390_010 0.0623489545 - - catalytic, putative [Ricinus communis]
8 Hb_000948_160 0.0624521683 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
9 Hb_000215_110 0.0625008505 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
10 Hb_000081_160 0.0639440359 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
11 Hb_003226_140 0.0643614928 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
12 Hb_001318_280 0.0677798162 - - Protein FAM18B, putative [Ricinus communis]
13 Hb_000417_130 0.0694768352 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
14 Hb_001357_150 0.0706738668 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
15 Hb_001279_150 0.0716528478 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
16 Hb_000334_280 0.0717335856 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
17 Hb_003125_120 0.0720397231 - - PREDICTED: TITAN-like protein [Jatropha curcas]
18 Hb_001357_350 0.0722079338 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000035_470 0.0740107689 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
20 Hb_002936_010 0.0745995992 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_001599_040 Hb_001599_040 Hb_002303_070 Hb_002303_070 Hb_001599_040--Hb_002303_070 Hb_001946_400 Hb_001946_400 Hb_001599_040--Hb_001946_400 Hb_006831_140 Hb_006831_140 Hb_001599_040--Hb_006831_140 Hb_005730_120 Hb_005730_120 Hb_001599_040--Hb_005730_120 Hb_000640_170 Hb_000640_170 Hb_001599_040--Hb_000640_170 Hb_007390_010 Hb_007390_010 Hb_001599_040--Hb_007390_010 Hb_000215_110 Hb_000215_110 Hb_002303_070--Hb_000215_110 Hb_003226_140 Hb_003226_140 Hb_002303_070--Hb_003226_140 Hb_002303_070--Hb_005730_120 Hb_005357_080 Hb_005357_080 Hb_002303_070--Hb_005357_080 Hb_005271_220 Hb_005271_220 Hb_002303_070--Hb_005271_220 Hb_001021_150 Hb_001021_150 Hb_001946_400--Hb_001021_150 Hb_014834_150 Hb_014834_150 Hb_001946_400--Hb_014834_150 Hb_002553_060 Hb_002553_060 Hb_001946_400--Hb_002553_060 Hb_008847_030 Hb_008847_030 Hb_001946_400--Hb_008847_030 Hb_007416_340 Hb_007416_340 Hb_001946_400--Hb_007416_340 Hb_000708_030 Hb_000708_030 Hb_006831_140--Hb_000708_030 Hb_000078_120 Hb_000078_120 Hb_006831_140--Hb_000078_120 Hb_093458_040 Hb_093458_040 Hb_006831_140--Hb_093458_040 Hb_001876_050 Hb_001876_050 Hb_006831_140--Hb_001876_050 Hb_006831_140--Hb_001021_150 Hb_002078_350 Hb_002078_350 Hb_006831_140--Hb_002078_350 Hb_005730_120--Hb_005271_220 Hb_032808_010 Hb_032808_010 Hb_005730_120--Hb_032808_010 Hb_004453_130 Hb_004453_130 Hb_005730_120--Hb_004453_130 Hb_002311_180 Hb_002311_180 Hb_005730_120--Hb_002311_180 Hb_168978_030 Hb_168978_030 Hb_000640_170--Hb_168978_030 Hb_000035_470 Hb_000035_470 Hb_000640_170--Hb_000035_470 Hb_009898_050 Hb_009898_050 Hb_000640_170--Hb_009898_050 Hb_000156_010 Hb_000156_010 Hb_000640_170--Hb_000156_010 Hb_026198_070 Hb_026198_070 Hb_000640_170--Hb_026198_070 Hb_001279_150 Hb_001279_150 Hb_007390_010--Hb_001279_150 Hb_004143_060 Hb_004143_060 Hb_007390_010--Hb_004143_060 Hb_000331_260 Hb_000331_260 Hb_007390_010--Hb_000331_260 Hb_007390_010--Hb_008847_030 Hb_007390_010--Hb_001021_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1124 9.6529 14.5393 15.3194 12.2393 17.3367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6275 20.9281 9.99858 16.569 12.0561

CAGE analysis