Hb_001604_030

Information

Type -
Description -
Location Contig1604: 21100-33617
Sequence    

Annotation

kegg
ID mus:103997095
description ubiquitin-conjugating enzyme E2 36
nr
ID NP_001267560.1
description ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus]
swissprot
ID Q94A97
description Ubiquitin-conjugating enzyme E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1
trembl
ID A0A0D2VGT7
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G173200 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ubiquitin-conjugating enzyme e2 36

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14354: 21111-33531
cDNA
(Sanger)
(ID:Location)		 021_D15.ab1: 21084-33477 , 023_J11.ab1: 21103-33427 , 039_H18.ab1: 21084-33451

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001604_030 0.0 - - ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus]
2 Hb_001785_040 0.068310059 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
3 Hb_023386_010 0.1005364644 - - PREDICTED: histidine triad nucleotide-binding protein 3 [Jatropha curcas]
4 Hb_000012_100 0.1010043994 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
5 Hb_000789_110 0.1039019833 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
6 Hb_000260_200 0.1102482616 - - -
7 Hb_002603_150 0.1109796572 - - PREDICTED: protein yippee-like [Jatropha curcas]
8 Hb_005663_120 0.1143068023 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
9 Hb_002316_120 0.1166226052 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
10 Hb_000027_150 0.1167734097 - - mitochondrial carrier protein, putative [Ricinus communis]
11 Hb_001687_040 0.1175501457 - - actin-depolymerizing factor [Hevea brasiliensis]
12 Hb_032969_030 0.1179610256 - - calmodulin binding protein, putative [Ricinus communis]
13 Hb_001304_140 0.1181197659 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
14 Hb_000163_210 0.1181742336 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
15 Hb_007317_160 0.1189570841 - - PREDICTED: uncharacterized protein At2g27730, mitochondrial [Jatropha curcas]
16 Hb_000300_390 0.1195782037 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
17 Hb_000035_430 0.1206151593 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Jatropha curcas]
18 Hb_183086_040 0.1228085944 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
19 Hb_000046_260 0.1235797014 - - acyl carrier protein, putative [Ricinus communis]
20 Hb_000922_100 0.1236964208 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]

Gene co-expression network

sample Hb_001604_030 Hb_001604_030 Hb_001785_040 Hb_001785_040 Hb_001604_030--Hb_001785_040 Hb_023386_010 Hb_023386_010 Hb_001604_030--Hb_023386_010 Hb_000012_100 Hb_000012_100 Hb_001604_030--Hb_000012_100 Hb_000789_110 Hb_000789_110 Hb_001604_030--Hb_000789_110 Hb_000260_200 Hb_000260_200 Hb_001604_030--Hb_000260_200 Hb_002603_150 Hb_002603_150 Hb_001604_030--Hb_002603_150 Hb_001785_040--Hb_000260_200 Hb_001785_040--Hb_002603_150 Hb_032969_030 Hb_032969_030 Hb_001785_040--Hb_032969_030 Hb_001785_040--Hb_000012_100 Hb_089100_020 Hb_089100_020 Hb_001785_040--Hb_089100_020 Hb_054074_010 Hb_054074_010 Hb_023386_010--Hb_054074_010 Hb_000820_130 Hb_000820_130 Hb_023386_010--Hb_000820_130 Hb_001304_140 Hb_001304_140 Hb_023386_010--Hb_001304_140 Hb_023386_010--Hb_000789_110 Hb_004994_260 Hb_004994_260 Hb_023386_010--Hb_004994_260 Hb_000181_300 Hb_000181_300 Hb_000012_100--Hb_000181_300 Hb_000193_120 Hb_000193_120 Hb_000012_100--Hb_000193_120 Hb_001634_040 Hb_001634_040 Hb_000012_100--Hb_001634_040 Hb_004156_040 Hb_004156_040 Hb_000012_100--Hb_004156_040 Hb_003053_030 Hb_003053_030 Hb_000012_100--Hb_003053_030 Hb_006573_220 Hb_006573_220 Hb_000012_100--Hb_006573_220 Hb_002316_120 Hb_002316_120 Hb_000789_110--Hb_002316_120 Hb_000270_720 Hb_000270_720 Hb_000789_110--Hb_000270_720 Hb_000300_390 Hb_000300_390 Hb_000789_110--Hb_000300_390 Hb_000789_110--Hb_000820_130 Hb_001377_380 Hb_001377_380 Hb_000789_110--Hb_001377_380 Hb_004007_180 Hb_004007_180 Hb_000789_110--Hb_004007_180 Hb_000163_210 Hb_000163_210 Hb_000260_200--Hb_000163_210 Hb_002391_220 Hb_002391_220 Hb_000260_200--Hb_002391_220 Hb_000069_140 Hb_000069_140 Hb_000260_200--Hb_000069_140 Hb_001424_020 Hb_001424_020 Hb_000260_200--Hb_001424_020 Hb_012539_020 Hb_012539_020 Hb_000260_200--Hb_012539_020 Hb_017862_010 Hb_017862_010 Hb_002603_150--Hb_017862_010 Hb_000069_100 Hb_000069_100 Hb_002603_150--Hb_000069_100 Hb_002603_150--Hb_000012_100 Hb_000069_550 Hb_000069_550 Hb_002603_150--Hb_000069_550 Hb_002603_150--Hb_003053_030 Hb_001687_040 Hb_001687_040 Hb_002603_150--Hb_001687_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
198.72 33.4884 139.322 188.438 101.351 137.07
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
935.335 878.722 507.187 108.297 80.226

CAGE analysis