Hb_001604_060

Information

Type -
Description -
Location Contig1604: 48781-53671
Sequence    

Annotation

kegg
ID rcu:RCOM_1522360
description Small glutamine-rich tetratricopeptide repeat-containing protein A, putative
nr
ID XP_012078581.1
description PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
swissprot
ID Q9MAH1
description TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana GN=TTL1 PE=1 SV=1
trembl
ID A0A067K8F7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14729 PE=4 SV=1
Gene Ontology
ID GO:0005623
description tpr repeat-containing thioredoxin ttl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14357: 48801-53433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001604_060 0.0 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
2 Hb_001268_420 0.0663628107 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
3 Hb_000329_200 0.0710197961 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
4 Hb_017225_020 0.0784434656 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
5 Hb_004195_270 0.0810587474 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
6 Hb_118419_010 0.0819795234 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
7 Hb_028872_080 0.0823740004 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
8 Hb_010361_010 0.0840393966 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
9 Hb_007441_330 0.0855021594 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
10 Hb_002871_190 0.0856213965 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
11 Hb_000205_090 0.0860772289 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
12 Hb_026889_030 0.0882273133 - - protein with unknown function [Ricinus communis]
13 Hb_010222_020 0.0909762314 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
14 Hb_007576_170 0.0920705236 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003057_090 0.0923731201 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
16 Hb_003018_010 0.0927272821 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
17 Hb_001105_030 0.0937687234 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
18 Hb_005847_060 0.0947248377 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
19 Hb_004102_070 0.0952672019 - - Cytochrome c oxidase subunit 5b-2, mitochondrial -like protein [Gossypium arboreum]
20 Hb_150651_040 0.0956670828 - - PREDICTED: random slug protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_001604_060 Hb_001604_060 Hb_001268_420 Hb_001268_420 Hb_001604_060--Hb_001268_420 Hb_000329_200 Hb_000329_200 Hb_001604_060--Hb_000329_200 Hb_017225_020 Hb_017225_020 Hb_001604_060--Hb_017225_020 Hb_004195_270 Hb_004195_270 Hb_001604_060--Hb_004195_270 Hb_118419_010 Hb_118419_010 Hb_001604_060--Hb_118419_010 Hb_028872_080 Hb_028872_080 Hb_001604_060--Hb_028872_080 Hb_001427_200 Hb_001427_200 Hb_001268_420--Hb_001427_200 Hb_032264_070 Hb_032264_070 Hb_001268_420--Hb_032264_070 Hb_001268_420--Hb_004195_270 Hb_001105_030 Hb_001105_030 Hb_001268_420--Hb_001105_030 Hb_001268_420--Hb_028872_080 Hb_010361_010 Hb_010361_010 Hb_000329_200--Hb_010361_010 Hb_024650_070 Hb_024650_070 Hb_000329_200--Hb_024650_070 Hb_001662_150 Hb_001662_150 Hb_000329_200--Hb_001662_150 Hb_000329_200--Hb_017225_020 Hb_000656_240 Hb_000656_240 Hb_000329_200--Hb_000656_240 Hb_005446_010 Hb_005446_010 Hb_017225_020--Hb_005446_010 Hb_027654_050 Hb_027654_050 Hb_017225_020--Hb_027654_050 Hb_007576_170 Hb_007576_170 Hb_017225_020--Hb_007576_170 Hb_017225_020--Hb_010361_010 Hb_017225_020--Hb_028872_080 Hb_010222_020 Hb_010222_020 Hb_004195_270--Hb_010222_020 Hb_000205_090 Hb_000205_090 Hb_004195_270--Hb_000205_090 Hb_004195_270--Hb_118419_010 Hb_000787_050 Hb_000787_050 Hb_004195_270--Hb_000787_050 Hb_002490_020 Hb_002490_020 Hb_004195_270--Hb_002490_020 Hb_004109_170 Hb_004109_170 Hb_118419_010--Hb_004109_170 Hb_118419_010--Hb_000205_090 Hb_000580_090 Hb_000580_090 Hb_118419_010--Hb_000580_090 Hb_118419_010--Hb_001105_030 Hb_000815_320 Hb_000815_320 Hb_118419_010--Hb_000815_320 Hb_026889_030 Hb_026889_030 Hb_028872_080--Hb_026889_030 Hb_006831_120 Hb_006831_120 Hb_028872_080--Hb_006831_120 Hb_028872_080--Hb_010361_010 Hb_028872_080--Hb_118419_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6017 2.77091 13.3849 9.18006 7.63858 9.25162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.3572 20.9923 14.01 8.13189 10.3222

CAGE analysis