Hb_001604_080

Information

Type -
Description -
Location Contig1604: 106207-109654
Sequence    

Annotation

kegg
ID rcu:RCOM_1216820
description Vesicle transport protein SEC20, putative
nr
ID XP_012077631.1
description PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
swissprot
ID Q8VHI8
description Vesicle transport protein SEC20 OS=Rattus norvegicus GN=Bnip1 PE=2 SV=1
trembl
ID A0A067KNF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12888 PE=4 SV=1
Gene Ontology
ID GO:0005622
description sec20 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14359: 106043-109495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001604_080 0.0 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
2 Hb_010180_020 0.0435292542 - - hypothetical protein glysoja_030394 [Glycine soja]
3 Hb_000815_040 0.0468773308 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
4 Hb_000103_560 0.0572255112 - - ADP-ribosylation factor, putative [Ricinus communis]
5 Hb_063716_050 0.057476484 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
6 Hb_000926_250 0.0599295552 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
7 Hb_000529_190 0.0613683002 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
8 Hb_125000_010 0.0637875267 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
9 Hb_002411_170 0.0638345181 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
10 Hb_000832_140 0.0672062987 - - actin depolymerizing factor 4 [Hevea brasiliensis]
11 Hb_002214_040 0.0678170466 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
12 Hb_003687_110 0.0716355768 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
13 Hb_003050_080 0.071825375 - - 40S ribosomal protein S14, putative [Ricinus communis]
14 Hb_011689_080 0.0723894708 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
15 Hb_168054_010 0.0724608254 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
16 Hb_006541_030 0.0728910556 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
17 Hb_002874_190 0.073095715 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
18 Hb_004545_060 0.0736046431 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
19 Hb_002078_150 0.0747564001 - - protein with unknown function [Ricinus communis]
20 Hb_118707_030 0.0755231539 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_001604_080 Hb_001604_080 Hb_010180_020 Hb_010180_020 Hb_001604_080--Hb_010180_020 Hb_000815_040 Hb_000815_040 Hb_001604_080--Hb_000815_040 Hb_000103_560 Hb_000103_560 Hb_001604_080--Hb_000103_560 Hb_063716_050 Hb_063716_050 Hb_001604_080--Hb_063716_050 Hb_000926_250 Hb_000926_250 Hb_001604_080--Hb_000926_250 Hb_000529_190 Hb_000529_190 Hb_001604_080--Hb_000529_190 Hb_004545_060 Hb_004545_060 Hb_010180_020--Hb_004545_060 Hb_004306_020 Hb_004306_020 Hb_010180_020--Hb_004306_020 Hb_002411_170 Hb_002411_170 Hb_010180_020--Hb_002411_170 Hb_000024_080 Hb_000024_080 Hb_010180_020--Hb_000024_080 Hb_010180_020--Hb_000815_040 Hb_002890_140 Hb_002890_140 Hb_000815_040--Hb_002890_140 Hb_000815_040--Hb_000103_560 Hb_002214_040 Hb_002214_040 Hb_000815_040--Hb_002214_040 Hb_000815_040--Hb_000529_190 Hb_118707_030 Hb_118707_030 Hb_000815_040--Hb_118707_030 Hb_000103_560--Hb_063716_050 Hb_000832_140 Hb_000832_140 Hb_000103_560--Hb_000832_140 Hb_002078_150 Hb_002078_150 Hb_000103_560--Hb_002078_150 Hb_000103_560--Hb_000529_190 Hb_001489_060 Hb_001489_060 Hb_063716_050--Hb_001489_060 Hb_003050_080 Hb_003050_080 Hb_063716_050--Hb_003050_080 Hb_063716_050--Hb_000529_190 Hb_063716_050--Hb_000832_140 Hb_000007_100 Hb_000007_100 Hb_000926_250--Hb_000007_100 Hb_033834_040 Hb_033834_040 Hb_000926_250--Hb_033834_040 Hb_002226_070 Hb_002226_070 Hb_000926_250--Hb_002226_070 Hb_002284_240 Hb_002284_240 Hb_000926_250--Hb_002284_240 Hb_000926_250--Hb_063716_050 Hb_000529_190--Hb_002214_040 Hb_001789_070 Hb_001789_070 Hb_000529_190--Hb_001789_070 Hb_000529_190--Hb_000832_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.9587 9.95522 19.0301 19.0315 29.1358 50.1238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.9089 56.2353 34.2837 16.3558 11.0021

CAGE analysis