Hb_001604_100

Information

Type -
Description -
Location Contig1604: 139724-144373
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa006890mg
description hypothetical protein
nr
ID XP_012078568.1
description PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
swissprot
ID C0LGN2
description Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1
trembl
ID A0A067K8F1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14724 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14361: 144112-144251 , PASA_asmbl_14362: 144254-144530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001604_100 0.0 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
2 Hb_000116_090 0.0980615225 - - catalase [Hevea brasiliensis]
3 Hb_000307_150 0.0987064433 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
4 Hb_001892_080 0.1145426677 - - Clavata3/esr-related 16, putative [Theobroma cacao]
5 Hb_002871_180 0.1167533567 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
6 Hb_000334_010 0.1199760273 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
7 Hb_007477_060 0.1212849375 - - unknown [Medicago truncatula]
8 Hb_000101_330 0.121801855 - - -
9 Hb_001269_030 0.1224860657 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
10 Hb_000077_380 0.124051599 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
11 Hb_001257_110 0.1254866135 - - PREDICTED: uncharacterized protein LOC105636396 [Jatropha curcas]
12 Hb_003536_020 0.1256658603 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
13 Hb_002609_140 0.1261707111 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000373_160 0.1262823689 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
15 Hb_006570_030 0.126438364 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
16 Hb_001699_140 0.1280083355 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
17 Hb_000545_180 0.1286974905 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
18 Hb_002368_060 0.1310536515 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000906_080 0.1314945822 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_000161_010 0.1329993187 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001604_100 Hb_001604_100 Hb_000116_090 Hb_000116_090 Hb_001604_100--Hb_000116_090 Hb_000307_150 Hb_000307_150 Hb_001604_100--Hb_000307_150 Hb_001892_080 Hb_001892_080 Hb_001604_100--Hb_001892_080 Hb_002871_180 Hb_002871_180 Hb_001604_100--Hb_002871_180 Hb_000334_010 Hb_000334_010 Hb_001604_100--Hb_000334_010 Hb_007477_060 Hb_007477_060 Hb_001604_100--Hb_007477_060 Hb_000116_090--Hb_000307_150 Hb_001699_140 Hb_001699_140 Hb_000116_090--Hb_001699_140 Hb_003536_020 Hb_003536_020 Hb_000116_090--Hb_003536_020 Hb_000116_090--Hb_007477_060 Hb_000116_090--Hb_002871_180 Hb_000101_330 Hb_000101_330 Hb_000116_090--Hb_000101_330 Hb_000307_150--Hb_001892_080 Hb_000307_150--Hb_002871_180 Hb_000307_150--Hb_000334_010 Hb_001269_030 Hb_001269_030 Hb_000307_150--Hb_001269_030 Hb_000307_150--Hb_007477_060 Hb_001416_130 Hb_001416_130 Hb_001892_080--Hb_001416_130 Hb_000139_310 Hb_000139_310 Hb_001892_080--Hb_000139_310 Hb_001892_080--Hb_001269_030 Hb_001028_040 Hb_001028_040 Hb_001892_080--Hb_001028_040 Hb_000589_340 Hb_000589_340 Hb_001892_080--Hb_000589_340 Hb_002871_180--Hb_007477_060 Hb_005649_060 Hb_005649_060 Hb_002871_180--Hb_005649_060 Hb_006570_030 Hb_006570_030 Hb_002871_180--Hb_006570_030 Hb_001766_160 Hb_001766_160 Hb_002871_180--Hb_001766_160 Hb_001322_120 Hb_001322_120 Hb_002871_180--Hb_001322_120 Hb_002871_180--Hb_000101_330 Hb_000334_010--Hb_000116_090 Hb_031069_040 Hb_031069_040 Hb_000334_010--Hb_031069_040 Hb_002799_060 Hb_002799_060 Hb_000334_010--Hb_002799_060 Hb_003299_060 Hb_003299_060 Hb_000334_010--Hb_003299_060 Hb_007477_060--Hb_000101_330 Hb_007477_060--Hb_006570_030 Hb_007477_060--Hb_001766_160 Hb_007477_060--Hb_003536_020 Hb_007477_060--Hb_001322_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.310981 1.15358 0.312021 0.0406843 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0364956 0 0.0146525 2.32581

CAGE analysis