Hb_001604_110

Information

Type -
Description -
Location Contig1604: 144610-146137
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001604_110 0.0 - - -
2 Hb_005539_320 0.0535639856 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
3 Hb_177627_010 0.0742750362 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_000153_020 0.1347106554 - - conserved hypothetical protein [Ricinus communis]
5 Hb_132629_010 0.1382276585 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
6 Hb_000007_310 0.1403902256 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
7 Hb_075570_010 0.1549183966 - - -
8 Hb_171554_020 0.1801798265 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
9 Hb_001892_160 0.1805153804 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
10 Hb_001178_120 0.1828835876 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
11 Hb_182310_010 0.1904766053 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
12 Hb_000094_390 0.2051208628 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]
13 Hb_001241_040 0.2115227077 - - -
14 Hb_003494_260 0.2182073348 - - -
15 Hb_000563_280 0.2260147743 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
16 Hb_000153_040 0.2285571584 - - -
17 Hb_010290_020 0.2456876069 - - RAB6-interacting protein, putative [Ricinus communis]
18 Hb_001741_100 0.2544388935 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
19 Hb_000345_480 0.2582508753 - - cyclin-dependent protein kinase, putative [Ricinus communis]
20 Hb_004307_040 0.2589847855 - - -

Gene co-expression network

sample Hb_001604_110 Hb_001604_110 Hb_005539_320 Hb_005539_320 Hb_001604_110--Hb_005539_320 Hb_177627_010 Hb_177627_010 Hb_001604_110--Hb_177627_010 Hb_000153_020 Hb_000153_020 Hb_001604_110--Hb_000153_020 Hb_132629_010 Hb_132629_010 Hb_001604_110--Hb_132629_010 Hb_000007_310 Hb_000007_310 Hb_001604_110--Hb_000007_310 Hb_075570_010 Hb_075570_010 Hb_001604_110--Hb_075570_010 Hb_005539_320--Hb_177627_010 Hb_005539_320--Hb_000153_020 Hb_001178_120 Hb_001178_120 Hb_005539_320--Hb_001178_120 Hb_005539_320--Hb_132629_010 Hb_005539_320--Hb_000007_310 Hb_177627_010--Hb_132629_010 Hb_177627_010--Hb_000007_310 Hb_177627_010--Hb_075570_010 Hb_177627_010--Hb_000153_020 Hb_000153_020--Hb_132629_010 Hb_000153_020--Hb_000007_310 Hb_000153_020--Hb_001178_120 Hb_000153_020--Hb_075570_010 Hb_132629_010--Hb_075570_010 Hb_132629_010--Hb_000007_310 Hb_003494_260 Hb_003494_260 Hb_132629_010--Hb_003494_260 Hb_000153_040 Hb_000153_040 Hb_132629_010--Hb_000153_040 Hb_000007_310--Hb_075570_010 Hb_000007_310--Hb_003494_260 Hb_000007_310--Hb_000153_040 Hb_075570_010--Hb_003494_260 Hb_075570_010--Hb_000153_040 Hb_000345_480 Hb_000345_480 Hb_075570_010--Hb_000345_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0725058 0 0 0 0.0270699 0.051029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis