Hb_001606_070

Information

Type -
Description -
Location Contig1606: 119386-127536
Sequence    

Annotation

kegg
ID rcu:RCOM_0549750
description fimbrin, putative
nr
ID XP_002532285.1
description fimbrin, putative [Ricinus communis]
swissprot
ID Q9FKI0
description Fimbrin-5 OS=Arabidopsis thaliana GN=FIM5 PE=1 SV=1
trembl
ID B9T216
description Fimbrin, putative OS=Ricinus communis GN=RCOM_0549750 PE=4 SV=1
Gene Ontology
ID GO:0003779
description fimbrin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14380: 119673-127325 , PASA_asmbl_14381: 119817-127325
cDNA
(Sanger)
(ID:Location)		 019_J13.ab1: 124845-127128 , 053_N22.ab1: 119692-121092

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001606_070 0.0 - - fimbrin, putative [Ricinus communis]
2 Hb_000849_040 0.0938887696 - - transcription factor, putative [Ricinus communis]
3 Hb_005779_100 0.0943863434 - - DNAJ [Theobroma cacao]
4 Hb_003030_080 0.0955241403 - - multidrug resistance pump, putative [Ricinus communis]
5 Hb_000427_110 0.0960490454 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
6 Hb_006787_040 0.0986440645 - - polyadenylate-binding protein, putative [Ricinus communis]
7 Hb_000861_040 0.0990291483 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
8 Hb_001366_220 0.0992318795 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003497_030 0.0994746169 - - ADP-ribosylation factor, putative [Ricinus communis]
10 Hb_000387_080 0.100617876 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
11 Hb_007229_060 0.1026011451 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
12 Hb_024952_010 0.1028542784 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
13 Hb_001981_090 0.1044475256 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
14 Hb_005000_290 0.1051226158 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
15 Hb_002835_170 0.1062025186 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
16 Hb_001478_050 0.106452785 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
17 Hb_001191_100 0.1068497702 - - F-actin capping protein beta subunit [Populus trichocarpa]
18 Hb_001396_230 0.1074350971 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
19 Hb_001473_130 0.1077483318 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
20 Hb_002326_030 0.1108979658 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001606_070 Hb_001606_070 Hb_000849_040 Hb_000849_040 Hb_001606_070--Hb_000849_040 Hb_005779_100 Hb_005779_100 Hb_001606_070--Hb_005779_100 Hb_003030_080 Hb_003030_080 Hb_001606_070--Hb_003030_080 Hb_000427_110 Hb_000427_110 Hb_001606_070--Hb_000427_110 Hb_006787_040 Hb_006787_040 Hb_001606_070--Hb_006787_040 Hb_000861_040 Hb_000861_040 Hb_001606_070--Hb_000861_040 Hb_000442_030 Hb_000442_030 Hb_000849_040--Hb_000442_030 Hb_000849_040--Hb_006787_040 Hb_000304_020 Hb_000304_020 Hb_000849_040--Hb_000304_020 Hb_024505_040 Hb_024505_040 Hb_000849_040--Hb_024505_040 Hb_000387_080 Hb_000387_080 Hb_000849_040--Hb_000387_080 Hb_002154_050 Hb_002154_050 Hb_005779_100--Hb_002154_050 Hb_006602_020 Hb_006602_020 Hb_005779_100--Hb_006602_020 Hb_006602_010 Hb_006602_010 Hb_005779_100--Hb_006602_010 Hb_001396_230 Hb_001396_230 Hb_005779_100--Hb_001396_230 Hb_002357_040 Hb_002357_040 Hb_005779_100--Hb_002357_040 Hb_001473_130 Hb_001473_130 Hb_005779_100--Hb_001473_130 Hb_000249_130 Hb_000249_130 Hb_003030_080--Hb_000249_130 Hb_003030_080--Hb_001396_230 Hb_003497_030 Hb_003497_030 Hb_003030_080--Hb_003497_030 Hb_003030_080--Hb_000849_040 Hb_003030_080--Hb_005779_100 Hb_002352_010 Hb_002352_010 Hb_000427_110--Hb_002352_010 Hb_000427_110--Hb_001473_130 Hb_001191_100 Hb_001191_100 Hb_000427_110--Hb_001191_100 Hb_002326_030 Hb_002326_030 Hb_000427_110--Hb_002326_030 Hb_026988_020 Hb_026988_020 Hb_000427_110--Hb_026988_020 Hb_006787_040--Hb_000442_030 Hb_000193_230 Hb_000193_230 Hb_006787_040--Hb_000193_230 Hb_006787_040--Hb_000387_080 Hb_001366_220 Hb_001366_220 Hb_006787_040--Hb_001366_220 Hb_006787_040--Hb_001191_100 Hb_003408_030 Hb_003408_030 Hb_000861_040--Hb_003408_030 Hb_000861_040--Hb_002326_030 Hb_002527_070 Hb_002527_070 Hb_000861_040--Hb_002527_070 Hb_007229_060 Hb_007229_060 Hb_000861_040--Hb_007229_060 Hb_000861_040--Hb_026988_020 Hb_000983_100 Hb_000983_100 Hb_000861_040--Hb_000983_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
249.853 19.8999 13.0848 16.7272 192.516 253.781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
316.548 238.445 448.756 52.2159 5.64658

CAGE analysis