Hb_001606_080

Information

Type -
Description -
Location Contig1606: 130186-133738
Sequence    

Annotation

kegg
ID rcu:RCOM_0549760
description protein binding protein, putative
nr
ID XP_012080693.1
description PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X2 [Jatropha curcas]
swissprot
ID Q9SJ85
description BTB/POZ domain-containing protein At2g04740 OS=Arabidopsis thaliana GN=At2g04740 PE=2 SV=2
trembl
ID A0A067KF19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13793 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14384: 133301-133692
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001606_080 0.0 - - PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X2 [Jatropha curcas]
2 Hb_005976_050 0.1834506849 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
3 Hb_026206_020 0.1835551627 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X1 [Jatropha curcas]
4 Hb_001366_120 0.1938748291 - - unknown [Zea mays]
5 Hb_027402_140 0.1941082557 - - PREDICTED: pentatricopeptide repeat-containing protein At3g47530 [Jatropha curcas]
6 Hb_000365_070 0.1950516379 - - PREDICTED: SWR1 complex subunit 2 [Jatropha curcas]
7 Hb_006649_080 0.2013611068 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
8 Hb_000415_060 0.2019711911 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
9 Hb_000326_030 0.2081488225 - - hypothetical protein PRUPE_ppa013909mg [Prunus persica]
10 Hb_021420_010 0.21093473 - - hypothetical protein CICLE_v10029508mg [Citrus clementina]
11 Hb_001749_010 0.2136372118 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
12 Hb_029921_020 0.2211192664 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
13 Hb_011030_010 0.2218626227 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
14 Hb_000357_120 0.2251099561 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
15 Hb_000212_310 0.2300121323 - - hypothetical protein JCGZ_24350 [Jatropha curcas]
16 Hb_007590_070 0.2309373076 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
17 Hb_010427_010 0.2314356087 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06191 [Jatropha curcas]
18 Hb_000330_100 0.2318887117 - - hypothetical protein VITISV_011650 [Vitis vinifera]
19 Hb_000627_080 0.2322975141 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
20 Hb_033187_050 0.2328574178 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]

Gene co-expression network

sample Hb_001606_080 Hb_001606_080 Hb_005976_050 Hb_005976_050 Hb_001606_080--Hb_005976_050 Hb_026206_020 Hb_026206_020 Hb_001606_080--Hb_026206_020 Hb_001366_120 Hb_001366_120 Hb_001606_080--Hb_001366_120 Hb_027402_140 Hb_027402_140 Hb_001606_080--Hb_027402_140 Hb_000365_070 Hb_000365_070 Hb_001606_080--Hb_000365_070 Hb_006649_080 Hb_006649_080 Hb_001606_080--Hb_006649_080 Hb_010427_010 Hb_010427_010 Hb_005976_050--Hb_010427_010 Hb_000212_310 Hb_000212_310 Hb_005976_050--Hb_000212_310 Hb_000031_150 Hb_000031_150 Hb_005976_050--Hb_000031_150 Hb_007904_160 Hb_007904_160 Hb_005976_050--Hb_007904_160 Hb_000933_060 Hb_000933_060 Hb_005976_050--Hb_000933_060 Hb_000330_100 Hb_000330_100 Hb_005976_050--Hb_000330_100 Hb_026206_020--Hb_006649_080 Hb_033187_050 Hb_033187_050 Hb_026206_020--Hb_033187_050 Hb_009620_030 Hb_009620_030 Hb_026206_020--Hb_009620_030 Hb_000479_150 Hb_000479_150 Hb_026206_020--Hb_000479_150 Hb_011218_070 Hb_011218_070 Hb_026206_020--Hb_011218_070 Hb_008554_120 Hb_008554_120 Hb_026206_020--Hb_008554_120 Hb_004899_060 Hb_004899_060 Hb_001366_120--Hb_004899_060 Hb_001366_120--Hb_005976_050 Hb_000069_170 Hb_000069_170 Hb_001366_120--Hb_000069_170 Hb_078897_010 Hb_078897_010 Hb_001366_120--Hb_078897_010 Hb_031862_130 Hb_031862_130 Hb_001366_120--Hb_031862_130 Hb_000313_060 Hb_000313_060 Hb_027402_140--Hb_000313_060 Hb_001584_150 Hb_001584_150 Hb_027402_140--Hb_001584_150 Hb_001930_010 Hb_001930_010 Hb_027402_140--Hb_001930_010 Hb_002636_050 Hb_002636_050 Hb_027402_140--Hb_002636_050 Hb_005914_150 Hb_005914_150 Hb_027402_140--Hb_005914_150 Hb_009486_200 Hb_009486_200 Hb_027402_140--Hb_009486_200 Hb_001450_050 Hb_001450_050 Hb_000365_070--Hb_001450_050 Hb_024570_010 Hb_024570_010 Hb_000365_070--Hb_024570_010 Hb_028089_010 Hb_028089_010 Hb_000365_070--Hb_028089_010 Hb_000365_070--Hb_000330_100 Hb_002835_040 Hb_002835_040 Hb_000365_070--Hb_002835_040 Hb_007545_030 Hb_007545_030 Hb_000365_070--Hb_007545_030 Hb_000742_250 Hb_000742_250 Hb_006649_080--Hb_000742_250 Hb_185467_010 Hb_185467_010 Hb_006649_080--Hb_185467_010 Hb_033834_010 Hb_033834_010 Hb_006649_080--Hb_033834_010 Hb_000359_250 Hb_000359_250 Hb_006649_080--Hb_000359_250 Hb_003878_120 Hb_003878_120 Hb_006649_080--Hb_003878_120 Hb_004096_020 Hb_004096_020 Hb_006649_080--Hb_004096_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.27695 0.739287 1.07868 0.459476 0.525564 2.39526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.255926 0.268413 2.67795 1.7352 0.692706

CAGE analysis