Hb_001608_030

Information

Type -
Description -
Location Contig1608: 54154-67948
Sequence    

Annotation

kegg
ID mtr:MTR_8g051890
description Cysteine-rich receptor-like protein kinase
nr
ID KHN22508.1
description Protein NSP-INTERACTING KINASE 1 [Glycine soja]
swissprot
ID -
description -
trembl
ID M0UVV6
description Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14399: 62137-62280
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001608_030 0.0 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
2 Hb_007137_030 0.1048124221 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
3 Hb_093177_010 0.1207131534 - - Phosphoprotein phosphatase [Theobroma cacao]
4 Hb_158696_010 0.1315255826 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
5 Hb_010080_020 0.1321495301 - - PREDICTED: uncharacterized protein LOC105635249 [Jatropha curcas]
6 Hb_000007_160 0.1415447492 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
7 Hb_000984_100 0.1439115976 - - receptor protein kinase, putative [Ricinus communis]
8 Hb_001408_150 0.1465570556 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
9 Hb_004106_010 0.1482088654 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
10 Hb_004466_070 0.1500128251 - - hypothetical protein RCOM_1447500 [Ricinus communis]
11 Hb_001248_110 0.152666011 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
12 Hb_001879_050 0.1527584361 - - Disease resistance protein RFL1, putative [Ricinus communis]
13 Hb_002609_150 0.1535234509 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
14 Hb_001921_010 0.1540093805 - - ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_042553_010 0.1554051108 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
16 Hb_001699_050 0.1585418636 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
17 Hb_017604_020 0.1607444758 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
18 Hb_115158_010 0.1614885641 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
19 Hb_012018_010 0.1653534056 - - hypothetical protein MIMGU_mgv1a0024251mg, partial [Erythranthe guttata]
20 Hb_006911_060 0.1663540402 - - hypothetical protein CISIN_1g000594mg [Citrus sinensis]

Gene co-expression network

sample Hb_001608_030 Hb_001608_030 Hb_007137_030 Hb_007137_030 Hb_001608_030--Hb_007137_030 Hb_093177_010 Hb_093177_010 Hb_001608_030--Hb_093177_010 Hb_158696_010 Hb_158696_010 Hb_001608_030--Hb_158696_010 Hb_010080_020 Hb_010080_020 Hb_001608_030--Hb_010080_020 Hb_000007_160 Hb_000007_160 Hb_001608_030--Hb_000007_160 Hb_000984_100 Hb_000984_100 Hb_001608_030--Hb_000984_100 Hb_007137_030--Hb_093177_010 Hb_042553_010 Hb_042553_010 Hb_007137_030--Hb_042553_010 Hb_133508_010 Hb_133508_010 Hb_007137_030--Hb_133508_010 Hb_102100_010 Hb_102100_010 Hb_007137_030--Hb_102100_010 Hb_115158_010 Hb_115158_010 Hb_007137_030--Hb_115158_010 Hb_004106_010 Hb_004106_010 Hb_093177_010--Hb_004106_010 Hb_093177_010--Hb_158696_010 Hb_093177_010--Hb_115158_010 Hb_001662_170 Hb_001662_170 Hb_093177_010--Hb_001662_170 Hb_158696_010--Hb_004106_010 Hb_012787_040 Hb_012787_040 Hb_158696_010--Hb_012787_040 Hb_158696_010--Hb_001662_170 Hb_003752_120 Hb_003752_120 Hb_158696_010--Hb_003752_120 Hb_004631_110 Hb_004631_110 Hb_158696_010--Hb_004631_110 Hb_012018_010 Hb_012018_010 Hb_010080_020--Hb_012018_010 Hb_001921_010 Hb_001921_010 Hb_010080_020--Hb_001921_010 Hb_073119_010 Hb_073119_010 Hb_010080_020--Hb_073119_010 Hb_012702_010 Hb_012702_010 Hb_010080_020--Hb_012702_010 Hb_021596_070 Hb_021596_070 Hb_010080_020--Hb_021596_070 Hb_001148_040 Hb_001148_040 Hb_000007_160--Hb_001148_040 Hb_001699_050 Hb_001699_050 Hb_000007_160--Hb_001699_050 Hb_001195_500 Hb_001195_500 Hb_000007_160--Hb_001195_500 Hb_002609_150 Hb_002609_150 Hb_000007_160--Hb_002609_150 Hb_008175_030 Hb_008175_030 Hb_000007_160--Hb_008175_030 Hb_000778_020 Hb_000778_020 Hb_000007_160--Hb_000778_020 Hb_001879_050 Hb_001879_050 Hb_000984_100--Hb_001879_050 Hb_000544_020 Hb_000544_020 Hb_000984_100--Hb_000544_020 Hb_002571_010 Hb_002571_010 Hb_000984_100--Hb_002571_010 Hb_003371_260 Hb_003371_260 Hb_000984_100--Hb_003371_260 Hb_004466_070 Hb_004466_070 Hb_000984_100--Hb_004466_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34845 38.2991 5.35512 11.9831 3.31812 1.95976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0712689 0.112071 0.605823 9.65354 3.36034

CAGE analysis