Hb_001609_040

Information

Type -
Description -
Location Contig1609: 29553-30362
Sequence    

Annotation

kegg
ID pop:POPTR_0017s05650g
description hypothetical protein
nr
ID XP_006372849.1
description hypothetical protein POPTR_0017s05650g [Populus trichocarpa]
swissprot
ID O74926
description Rhomboid protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rbd2 PE=3 SV=2
trembl
ID U5FL43
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s05650g PE=4 SV=1
Gene Ontology
ID GO:0016021
description rhomboid protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001609_040 0.0 - - hypothetical protein POPTR_0017s05650g [Populus trichocarpa]
2 Hb_005993_010 0.0512057588 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
3 Hb_004055_120 0.0932465174 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
4 Hb_013394_050 0.0970037629 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
5 Hb_000742_020 0.0994394906 - - ARF GTPase activator, putative [Ricinus communis]
6 Hb_019181_030 0.1010915109 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
7 Hb_000152_600 0.1090525676 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
8 Hb_185830_060 0.1117177586 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
9 Hb_009661_030 0.1133668967 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
10 Hb_000402_130 0.1137666379 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
11 Hb_000359_310 0.1141012351 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
12 Hb_003911_020 0.1144060799 - - PREDICTED: uncharacterized protein LOC105121332 [Populus euphratica]
13 Hb_000197_020 0.1152354638 - - PREDICTED: protein RER1A [Jatropha curcas]
14 Hb_002660_110 0.115974529 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
15 Hb_005701_120 0.118579302 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
16 Hb_000069_640 0.1187274669 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
17 Hb_000917_130 0.1190569831 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
18 Hb_000705_230 0.1224252125 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
19 Hb_001486_040 0.1228196837 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
20 Hb_010672_020 0.1230030057 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001609_040 Hb_001609_040 Hb_005993_010 Hb_005993_010 Hb_001609_040--Hb_005993_010 Hb_004055_120 Hb_004055_120 Hb_001609_040--Hb_004055_120 Hb_013394_050 Hb_013394_050 Hb_001609_040--Hb_013394_050 Hb_000742_020 Hb_000742_020 Hb_001609_040--Hb_000742_020 Hb_019181_030 Hb_019181_030 Hb_001609_040--Hb_019181_030 Hb_000152_600 Hb_000152_600 Hb_001609_040--Hb_000152_600 Hb_185830_060 Hb_185830_060 Hb_005993_010--Hb_185830_060 Hb_005993_010--Hb_000152_600 Hb_005993_010--Hb_004055_120 Hb_000069_640 Hb_000069_640 Hb_005993_010--Hb_000069_640 Hb_000705_230 Hb_000705_230 Hb_005993_010--Hb_000705_230 Hb_000256_150 Hb_000256_150 Hb_004055_120--Hb_000256_150 Hb_000787_160 Hb_000787_160 Hb_004055_120--Hb_000787_160 Hb_000197_020 Hb_000197_020 Hb_004055_120--Hb_000197_020 Hb_000917_130 Hb_000917_130 Hb_004055_120--Hb_000917_130 Hb_003998_040 Hb_003998_040 Hb_004055_120--Hb_003998_040 Hb_000300_270 Hb_000300_270 Hb_004055_120--Hb_000300_270 Hb_013394_050--Hb_000069_640 Hb_013394_050--Hb_019181_030 Hb_013394_050--Hb_000197_020 Hb_000244_170 Hb_000244_170 Hb_013394_050--Hb_000244_170 Hb_013394_050--Hb_000742_020 Hb_013394_050--Hb_004055_120 Hb_007441_080 Hb_007441_080 Hb_000742_020--Hb_007441_080 Hb_000742_020--Hb_005993_010 Hb_000742_020--Hb_000069_640 Hb_000742_020--Hb_000244_170 Hb_019181_030--Hb_000152_600 Hb_007390_020 Hb_007390_020 Hb_019181_030--Hb_007390_020 Hb_010368_050 Hb_010368_050 Hb_019181_030--Hb_010368_050 Hb_019181_030--Hb_000197_020 Hb_081599_010 Hb_081599_010 Hb_000152_600--Hb_081599_010 Hb_000072_300 Hb_000072_300 Hb_000152_600--Hb_000072_300 Hb_000130_270 Hb_000130_270 Hb_000152_600--Hb_000130_270 Hb_000152_600--Hb_000069_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.66287 3.84821 5.37262 15.4282 1.57901 3.94847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.18649 5.48094 4.53744 3.48469 6.39968

CAGE analysis