Hb_001609_080

Information

Type -
Description -
Location Contig1609: 120191-123980
Sequence    

Annotation

kegg
ID pop:POPTR_0017s05660g
description hypothetical protein
nr
ID XP_006372850.1
description hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FMR1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s05660g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001609_080 0.0 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
2 Hb_005653_100 0.0534255846 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
3 Hb_000407_110 0.0754986433 - - ripening-induced ACC oxidase [Carica papaya]
4 Hb_006919_010 0.0831058592 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
5 Hb_020902_020 0.0925314214 - - hypothetical protein JCGZ_07820 [Jatropha curcas]
6 Hb_000288_140 0.0998166928 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
7 Hb_111693_010 0.1169384299 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
8 Hb_058526_010 0.1184856738 - - -
9 Hb_002374_110 0.1203304458 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
10 Hb_004079_110 0.1223638178 - - PREDICTED: uncharacterized protein LOC100257802 [Vitis vinifera]
11 Hb_000220_170 0.1225368096 - - -
12 Hb_008080_040 0.1248036855 - - hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
13 Hb_004055_080 0.1260031011 - - calmodulin binding protein, putative [Ricinus communis]
14 Hb_007483_030 0.1285569281 - - -
15 Hb_003166_040 0.1288392694 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
16 Hb_001006_200 0.1365800538 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
17 Hb_001775_050 0.1371470573 - - ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
18 Hb_127743_030 0.1390370493 - - amino acid transporter, putative [Ricinus communis]
19 Hb_001660_040 0.1413795738 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
20 Hb_001473_100 0.142036419 - - chalcone synthase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001609_080 Hb_001609_080 Hb_005653_100 Hb_005653_100 Hb_001609_080--Hb_005653_100 Hb_000407_110 Hb_000407_110 Hb_001609_080--Hb_000407_110 Hb_006919_010 Hb_006919_010 Hb_001609_080--Hb_006919_010 Hb_020902_020 Hb_020902_020 Hb_001609_080--Hb_020902_020 Hb_000288_140 Hb_000288_140 Hb_001609_080--Hb_000288_140 Hb_111693_010 Hb_111693_010 Hb_001609_080--Hb_111693_010 Hb_005653_100--Hb_000407_110 Hb_005653_100--Hb_020902_020 Hb_005653_100--Hb_111693_010 Hb_004055_080 Hb_004055_080 Hb_005653_100--Hb_004055_080 Hb_005653_100--Hb_006919_010 Hb_000407_110--Hb_006919_010 Hb_007483_030 Hb_007483_030 Hb_000407_110--Hb_007483_030 Hb_008080_040 Hb_008080_040 Hb_000407_110--Hb_008080_040 Hb_004586_080 Hb_004586_080 Hb_000407_110--Hb_004586_080 Hb_002374_110 Hb_002374_110 Hb_006919_010--Hb_002374_110 Hb_002376_030 Hb_002376_030 Hb_006919_010--Hb_002376_030 Hb_006919_010--Hb_007483_030 Hb_003166_040 Hb_003166_040 Hb_006919_010--Hb_003166_040 Hb_001775_050 Hb_001775_050 Hb_020902_020--Hb_001775_050 Hb_020902_020--Hb_008080_040 Hb_020902_020--Hb_000407_110 Hb_001454_300 Hb_001454_300 Hb_020902_020--Hb_001454_300 Hb_001660_040 Hb_001660_040 Hb_000288_140--Hb_001660_040 Hb_058526_010 Hb_058526_010 Hb_000288_140--Hb_058526_010 Hb_000005_350 Hb_000005_350 Hb_000288_140--Hb_000005_350 Hb_000288_140--Hb_003166_040 Hb_127743_030 Hb_127743_030 Hb_000288_140--Hb_127743_030 Hb_111693_010--Hb_004055_080 Hb_000220_170 Hb_000220_170 Hb_111693_010--Hb_000220_170 Hb_111693_010--Hb_058526_010 Hb_001789_010 Hb_001789_010 Hb_111693_010--Hb_001789_010 Hb_000029_420 Hb_000029_420 Hb_111693_010--Hb_000029_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.28984 1.38511 0.376661 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.53164 0.0990821

CAGE analysis