Hb_001610_110

Information

Type -
Description -
Location Contig1610: 105835-109086
Sequence    

Annotation

kegg
ID tcc:TCM_037724
description Vacuolar protein sorting-associated protein 32 isoform 1
nr
ID XP_012076817.1
description PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
swissprot
ID Q9SZE4
description Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=1 SV=1
trembl
ID A0A067KC31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07332 PE=4 SV=1
Gene Ontology
ID GO:0007034
description vacuolar protein sorting-associated protein 32 homolog 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14448: 105728-109035 , PASA_asmbl_14449: 105857-109005 , PASA_asmbl_14450: 105997-106429
cDNA
(Sanger)
(ID:Location)		 006_P23.ab1: 106401-109035 , 010_M13.ab1: 106491-108984 , 013_P01.ab1: 106174-109035 , 019_B03.ab1: 106432-108984 , 032_H10.ab1: 106368-108984 , 039_N03.ab1: 106378-108983 , 041_B19.ab1: 106773-109020

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001610_110 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
2 Hb_001623_140 0.0703720446 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
3 Hb_052764_050 0.0727034495 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
4 Hb_004324_340 0.0765791656 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001288_080 0.079122974 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
6 Hb_000621_080 0.0816086391 - - conserved hypothetical protein [Ricinus communis]
7 Hb_086639_070 0.0846129263 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
8 Hb_005928_110 0.0846335182 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
9 Hb_023827_040 0.0848794074 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
10 Hb_001720_010 0.0863979243 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
11 Hb_001252_010 0.0898105522 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
12 Hb_054865_090 0.0915014991 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
13 Hb_000224_060 0.0922192932 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
14 Hb_004032_270 0.092265579 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
15 Hb_001168_040 0.0955555897 - - -
16 Hb_173953_010 0.0959263069 - - hypothetical protein RCOM_1267370 [Ricinus communis]
17 Hb_002027_260 0.0974474974 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
18 Hb_033095_020 0.0990652039 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005307_030 0.0991249261 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
20 Hb_000125_170 0.1015734957 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]

Gene co-expression network

sample Hb_001610_110 Hb_001610_110 Hb_001623_140 Hb_001623_140 Hb_001610_110--Hb_001623_140 Hb_052764_050 Hb_052764_050 Hb_001610_110--Hb_052764_050 Hb_004324_340 Hb_004324_340 Hb_001610_110--Hb_004324_340 Hb_001288_080 Hb_001288_080 Hb_001610_110--Hb_001288_080 Hb_000621_080 Hb_000621_080 Hb_001610_110--Hb_000621_080 Hb_086639_070 Hb_086639_070 Hb_001610_110--Hb_086639_070 Hb_001168_040 Hb_001168_040 Hb_001623_140--Hb_001168_040 Hb_001623_140--Hb_001288_080 Hb_001720_010 Hb_001720_010 Hb_001623_140--Hb_001720_010 Hb_023827_040 Hb_023827_040 Hb_001623_140--Hb_023827_040 Hb_001623_140--Hb_004324_340 Hb_052764_050--Hb_001288_080 Hb_012114_060 Hb_012114_060 Hb_052764_050--Hb_012114_060 Hb_000548_050 Hb_000548_050 Hb_052764_050--Hb_000548_050 Hb_001828_200 Hb_001828_200 Hb_052764_050--Hb_001828_200 Hb_052764_050--Hb_001623_140 Hb_173953_010 Hb_173953_010 Hb_004324_340--Hb_173953_010 Hb_004324_340--Hb_001288_080 Hb_004324_340--Hb_001720_010 Hb_005928_110 Hb_005928_110 Hb_004324_340--Hb_005928_110 Hb_001288_080--Hb_001720_010 Hb_001288_080--Hb_001168_040 Hb_000923_020 Hb_000923_020 Hb_000621_080--Hb_000923_020 Hb_002495_070 Hb_002495_070 Hb_000621_080--Hb_002495_070 Hb_004722_060 Hb_004722_060 Hb_000621_080--Hb_004722_060 Hb_002150_080 Hb_002150_080 Hb_000621_080--Hb_002150_080 Hb_000621_080--Hb_086639_070 Hb_000661_250 Hb_000661_250 Hb_086639_070--Hb_000661_250 Hb_000808_040 Hb_000808_040 Hb_086639_070--Hb_000808_040 Hb_000000_160 Hb_000000_160 Hb_086639_070--Hb_000000_160 Hb_070739_010 Hb_070739_010 Hb_086639_070--Hb_070739_010 Hb_001259_090 Hb_001259_090 Hb_086639_070--Hb_001259_090 Hb_007919_060 Hb_007919_060 Hb_086639_070--Hb_007919_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
393.102 401.266 137.319 120.716 286.456 363.329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
288.861 338.108 220.816 121.619 55.1442

CAGE analysis