Hb_001616_020

Information

Type -
Description -
Location Contig1616: 22239-23777
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24770g
description POPTRDRAFT_645456; wound-responsive family protein
nr
ID XP_012085053.1
description PREDICTED: wound-induced basic protein [Jatropha curcas]
swissprot
ID Q09020
description Wound-induced basic protein OS=Phaseolus vulgaris GN=PR4 PE=2 SV=1
trembl
ID B9GQL8
description Wound-responsive family protein OS=Populus trichocarpa GN=POPTR_0002s24770g PE=4 SV=1
Gene Ontology
ID GO:0005829
description wound-induced basic protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14482: 22223-23674
cDNA
(Sanger)
(ID:Location)		 007_C01.ab1: 22283-23674 , 015_C19.ab1: 22386-23604 , 018_I05.ab1: 22380-23662 , 023_C20.ab1: 22269-23664 , 027_J12.ab1: 22281-23624 , 030_A09.ab1: 22380-23662 , 036_H01.ab1: 22386-23636 , 038_A10.ab1: 22380-23662 , 040_C11.ab1: 22406-23662 , 048_O03.ab1: 22442-23662 , 049_C03.ab1: 22281-23624 , 051_O09.ab1: 22269-23664

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001616_020 0.0 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
2 Hb_009252_130 0.0909127757 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
3 Hb_011689_050 0.0946987591 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
4 Hb_004958_050 0.099532654 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
5 Hb_002234_210 0.1010231786 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
6 Hb_000144_110 0.1137796895 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
7 Hb_151930_020 0.1163290928 - - Wound-induced protein WIN1 precursor, putative [Ricinus communis]
8 Hb_000815_270 0.1201450512 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011310_060 0.1245838547 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
10 Hb_000190_060 0.1249694277 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
11 Hb_007441_180 0.12593647 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000617_050 0.1277987305 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
13 Hb_003638_080 0.129105393 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
14 Hb_001621_180 0.1309945751 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
15 Hb_002326_180 0.135961009 - - Protein Z, putative [Ricinus communis]
16 Hb_002293_030 0.1362400317 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
17 Hb_167467_010 0.1362991191 - - hypothetical protein CICLE_v10029508mg [Citrus clementina]
18 Hb_000025_290 0.1374865775 - - Uncharacterized protein TCM_031320 [Theobroma cacao]
19 Hb_000526_150 0.1434172611 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
20 Hb_150299_030 0.1442558899 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001616_020 Hb_001616_020 Hb_009252_130 Hb_009252_130 Hb_001616_020--Hb_009252_130 Hb_011689_050 Hb_011689_050 Hb_001616_020--Hb_011689_050 Hb_004958_050 Hb_004958_050 Hb_001616_020--Hb_004958_050 Hb_002234_210 Hb_002234_210 Hb_001616_020--Hb_002234_210 Hb_000144_110 Hb_000144_110 Hb_001616_020--Hb_000144_110 Hb_151930_020 Hb_151930_020 Hb_001616_020--Hb_151930_020 Hb_000190_060 Hb_000190_060 Hb_009252_130--Hb_000190_060 Hb_000815_270 Hb_000815_270 Hb_009252_130--Hb_000815_270 Hb_000563_590 Hb_000563_590 Hb_009252_130--Hb_000563_590 Hb_000061_480 Hb_000061_480 Hb_009252_130--Hb_000061_480 Hb_001621_180 Hb_001621_180 Hb_009252_130--Hb_001621_180 Hb_000963_030 Hb_000963_030 Hb_011689_050--Hb_000963_030 Hb_011689_050--Hb_004958_050 Hb_001123_120 Hb_001123_120 Hb_011689_050--Hb_001123_120 Hb_000161_050 Hb_000161_050 Hb_011689_050--Hb_000161_050 Hb_011689_050--Hb_000144_110 Hb_004958_050--Hb_002234_210 Hb_000634_050 Hb_000634_050 Hb_004958_050--Hb_000634_050 Hb_000526_150 Hb_000526_150 Hb_004958_050--Hb_000526_150 Hb_003638_080 Hb_003638_080 Hb_004958_050--Hb_003638_080 Hb_002234_210--Hb_000634_050 Hb_003058_070 Hb_003058_070 Hb_002234_210--Hb_003058_070 Hb_000417_110 Hb_000417_110 Hb_002234_210--Hb_000417_110 Hb_002234_210--Hb_000190_060 Hb_002234_210--Hb_009252_130 Hb_000144_110--Hb_000815_270 Hb_011609_180 Hb_011609_180 Hb_000144_110--Hb_011609_180 Hb_001045_080 Hb_001045_080 Hb_000144_110--Hb_001045_080 Hb_009851_100 Hb_009851_100 Hb_000144_110--Hb_009851_100 Hb_000025_600 Hb_000025_600 Hb_000144_110--Hb_000025_600 Hb_000144_110--Hb_009252_130 Hb_007477_090 Hb_007477_090 Hb_151930_020--Hb_007477_090 Hb_007441_180 Hb_007441_180 Hb_151930_020--Hb_007441_180 Hb_001821_120 Hb_001821_120 Hb_151930_020--Hb_001821_120 Hb_000580_160 Hb_000580_160 Hb_151930_020--Hb_000580_160 Hb_011310_060 Hb_011310_060 Hb_151930_020--Hb_011310_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
698.594 75.8129 162.703 73.7775 552.249 450.268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1039.04 2375.74 442.541 169.426 57.2496

CAGE analysis