Hb_001616_040

Information

Type -
Description -
Location Contig1616: 77484-80216
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24740g
description POPTRDRAFT_830583; mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
nr
ID XP_012085061.1
description PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K269
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17513 PE=4 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial import inner membrane translocase subunit tim17 tim22 tim23 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14485: 77582-80152
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001616_040 0.0 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
2 Hb_000920_110 0.059390237 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
3 Hb_006541_010 0.0604225043 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
4 Hb_001016_030 0.0609071566 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
5 Hb_000030_290 0.062611205 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
6 Hb_010175_040 0.0627989381 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
7 Hb_003226_100 0.0629969244 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
8 Hb_009711_020 0.0644111652 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
9 Hb_001476_080 0.0684985214 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
10 Hb_000201_120 0.0706813342 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
11 Hb_000020_060 0.0740510232 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
12 Hb_000334_210 0.0748811602 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
13 Hb_003787_010 0.0765036301 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
14 Hb_159809_020 0.0767605822 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000574_480 0.0768052649 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
16 Hb_007576_170 0.0772573791 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005736_060 0.0775006419 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
18 Hb_000680_140 0.0775675762 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
19 Hb_002830_020 0.0778306358 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
20 Hb_002676_090 0.0779173867 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001616_040 Hb_001616_040 Hb_000920_110 Hb_000920_110 Hb_001616_040--Hb_000920_110 Hb_006541_010 Hb_006541_010 Hb_001616_040--Hb_006541_010 Hb_001016_030 Hb_001016_030 Hb_001616_040--Hb_001016_030 Hb_000030_290 Hb_000030_290 Hb_001616_040--Hb_000030_290 Hb_010175_040 Hb_010175_040 Hb_001616_040--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_001616_040--Hb_003226_100 Hb_000920_110--Hb_003226_100 Hb_002056_050 Hb_002056_050 Hb_000920_110--Hb_002056_050 Hb_001484_070 Hb_001484_070 Hb_000920_110--Hb_001484_070 Hb_000920_110--Hb_010175_040 Hb_000479_090 Hb_000479_090 Hb_000920_110--Hb_000479_090 Hb_033153_060 Hb_033153_060 Hb_006541_010--Hb_033153_060 Hb_004459_040 Hb_004459_040 Hb_006541_010--Hb_004459_040 Hb_007576_170 Hb_007576_170 Hb_006541_010--Hb_007576_170 Hb_011644_030 Hb_011644_030 Hb_006541_010--Hb_011644_030 Hb_007441_040 Hb_007441_040 Hb_006541_010--Hb_007441_040 Hb_001140_370 Hb_001140_370 Hb_001016_030--Hb_001140_370 Hb_000201_120 Hb_000201_120 Hb_001016_030--Hb_000201_120 Hb_001421_060 Hb_001421_060 Hb_001016_030--Hb_001421_060 Hb_003126_090 Hb_003126_090 Hb_001016_030--Hb_003126_090 Hb_002830_020 Hb_002830_020 Hb_001016_030--Hb_002830_020 Hb_009711_020 Hb_009711_020 Hb_000030_290--Hb_009711_020 Hb_153544_010 Hb_153544_010 Hb_000030_290--Hb_153544_010 Hb_000334_210 Hb_000334_210 Hb_000030_290--Hb_000334_210 Hb_000331_470 Hb_000331_470 Hb_000030_290--Hb_000331_470 Hb_002609_210 Hb_002609_210 Hb_000030_290--Hb_002609_210 Hb_000261_140 Hb_000261_140 Hb_010175_040--Hb_000261_140 Hb_143496_010 Hb_143496_010 Hb_010175_040--Hb_143496_010 Hb_000417_360 Hb_000417_360 Hb_010175_040--Hb_000417_360 Hb_001141_140 Hb_001141_140 Hb_010175_040--Hb_001141_140 Hb_004157_030 Hb_004157_030 Hb_003226_100--Hb_004157_030 Hb_003018_020 Hb_003018_020 Hb_003226_100--Hb_003018_020 Hb_003226_100--Hb_002056_050 Hb_003226_100--Hb_143496_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7736 6.8967 9.6724 11.5445 9.59859 13.1099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.8457 33.1305 15.4924 10.8481 8.03211

CAGE analysis