Hb_001616_050

Information

Type -
Description -
Location Contig1616: 80812-87097
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24730g
description POPTRDRAFT_711559; forkhead-associated domain-containing family protein
nr
ID XP_012085062.1
description PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
swissprot
ID Q9SFV2
description FHA domain-containing protein FHA2 OS=Arabidopsis thaliana GN=FHA2 PE=1 SV=1
trembl
ID A0A067JQX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17514 PE=4 SV=1
Gene Ontology
ID GO:0005515
description forkhead-associated domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14488: 80831-87020 , PASA_asmbl_14489: 82906-83157
cDNA
(Sanger)
(ID:Location)		 012_A11.ab1: 86379-87137

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001616_050 0.0 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
2 Hb_003878_140 0.06055276 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
3 Hb_007229_040 0.073537541 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
4 Hb_000224_060 0.0738123536 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
5 Hb_001946_300 0.076220908 - - PREDICTED: F-box protein At-B [Jatropha curcas]
6 Hb_002977_010 0.0764811968 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
7 Hb_032202_240 0.078654247 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
8 Hb_001771_120 0.0787638491 - - K+ transport growth defect-like protein [Hevea brasiliensis]
9 Hb_002301_220 0.0795578653 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
10 Hb_005883_010 0.0814593925 - - conserved hypothetical protein [Ricinus communis]
11 Hb_017075_030 0.0822773728 - - helicase, putative [Ricinus communis]
12 Hb_000077_070 0.0824643619 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
13 Hb_000291_190 0.0826568838 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
14 Hb_003656_160 0.0868748463 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
15 Hb_002221_050 0.0874162949 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
16 Hb_000032_320 0.087485107 - - protein binding protein, putative [Ricinus communis]
17 Hb_000320_380 0.0879041855 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
18 Hb_004635_050 0.0882330139 - - nucleolar phosphoprotein, putative [Ricinus communis]
19 Hb_000140_080 0.0886114871 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
20 Hb_000953_030 0.0890082513 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001616_050 Hb_001616_050 Hb_003878_140 Hb_003878_140 Hb_001616_050--Hb_003878_140 Hb_007229_040 Hb_007229_040 Hb_001616_050--Hb_007229_040 Hb_000224_060 Hb_000224_060 Hb_001616_050--Hb_000224_060 Hb_001946_300 Hb_001946_300 Hb_001616_050--Hb_001946_300 Hb_002977_010 Hb_002977_010 Hb_001616_050--Hb_002977_010 Hb_032202_240 Hb_032202_240 Hb_001616_050--Hb_032202_240 Hb_003878_140--Hb_000224_060 Hb_003878_140--Hb_002977_010 Hb_001584_170 Hb_001584_170 Hb_003878_140--Hb_001584_170 Hb_000865_080 Hb_000865_080 Hb_003878_140--Hb_000865_080 Hb_017075_030 Hb_017075_030 Hb_003878_140--Hb_017075_030 Hb_140049_020 Hb_140049_020 Hb_007229_040--Hb_140049_020 Hb_001117_190 Hb_001117_190 Hb_007229_040--Hb_001117_190 Hb_005883_010 Hb_005883_010 Hb_007229_040--Hb_005883_010 Hb_000320_380 Hb_000320_380 Hb_007229_040--Hb_000320_380 Hb_005188_060 Hb_005188_060 Hb_007229_040--Hb_005188_060 Hb_007943_120 Hb_007943_120 Hb_007229_040--Hb_007943_120 Hb_000291_190 Hb_000291_190 Hb_000224_060--Hb_000291_190 Hb_000224_060--Hb_000865_080 Hb_000140_080 Hb_000140_080 Hb_000224_060--Hb_000140_080 Hb_000025_360 Hb_000025_360 Hb_000224_060--Hb_000025_360 Hb_000363_130 Hb_000363_130 Hb_001946_300--Hb_000363_130 Hb_000313_340 Hb_000313_340 Hb_001946_300--Hb_000313_340 Hb_001946_300--Hb_140049_020 Hb_147737_010 Hb_147737_010 Hb_001946_300--Hb_147737_010 Hb_001946_300--Hb_032202_240 Hb_000504_160 Hb_000504_160 Hb_001946_300--Hb_000504_160 Hb_002977_010--Hb_032202_240 Hb_006316_070 Hb_006316_070 Hb_002977_010--Hb_006316_070 Hb_002849_080 Hb_002849_080 Hb_002977_010--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_002977_010--Hb_148209_020 Hb_000331_160 Hb_000331_160 Hb_032202_240--Hb_000331_160 Hb_032202_240--Hb_017075_030 Hb_025477_060 Hb_025477_060 Hb_032202_240--Hb_025477_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
171.819 166.185 78.1415 40.0129 189.114 173.505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
97.406 59.9692 95.2525 57.9717 35.784

CAGE analysis