Hb_001616_060

Information

Type -
Description -
Location Contig1616: 87892-91231
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13850g
description hypothetical protein
nr
ID XP_012085063.1
description PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
swissprot
ID Q9SYA6
description DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana GN=NRPB10L PE=3 SV=1
trembl
ID A0A068V838
description Coffea canephora DH200=94 genomic scaffold, scaffold_115 OS=Coffea canephora GN=GSCOC_T00017106001 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerases and iii subunit rpabc5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14487: 86167-87139 , PASA_asmbl_14490: 87813-91046
cDNA
(Sanger)
(ID:Location)		 012_A11r.ab1: 86167-86932

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001616_060 0.0 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
2 Hb_001575_020 0.0645268858 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000069_100 0.0666933002 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002078_460 0.0675161771 - - -
5 Hb_007382_150 0.0714145292 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
6 Hb_002097_060 0.0747213939 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
7 Hb_008289_060 0.0791191356 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
8 Hb_001160_030 0.0799484544 transcription factor TF Family: Alfin-like hypothetical protein POPTR_0018s05470g [Populus trichocarpa]
9 Hb_000030_100 0.0812564569 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
10 Hb_002028_130 0.0815266066 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
11 Hb_003938_180 0.0827617784 - - lesion inducing family protein [Populus trichocarpa]
12 Hb_000567_170 0.0834079065 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
13 Hb_003376_030 0.0844640112 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
14 Hb_003929_120 0.0844754792 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
15 Hb_009404_020 0.0867140667 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000146_020 0.0896864943 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
17 Hb_000061_300 0.0900710246 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
18 Hb_001862_100 0.0910446006 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
19 Hb_002918_200 0.0915516587 - - -
20 Hb_002471_080 0.0933256279 - - oxidoreductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001616_060 Hb_001616_060 Hb_001575_020 Hb_001575_020 Hb_001616_060--Hb_001575_020 Hb_000069_100 Hb_000069_100 Hb_001616_060--Hb_000069_100 Hb_002078_460 Hb_002078_460 Hb_001616_060--Hb_002078_460 Hb_007382_150 Hb_007382_150 Hb_001616_060--Hb_007382_150 Hb_002097_060 Hb_002097_060 Hb_001616_060--Hb_002097_060 Hb_008289_060 Hb_008289_060 Hb_001616_060--Hb_008289_060 Hb_003929_120 Hb_003929_120 Hb_001575_020--Hb_003929_120 Hb_001575_020--Hb_002097_060 Hb_001575_020--Hb_000069_100 Hb_000061_300 Hb_000061_300 Hb_001575_020--Hb_000061_300 Hb_001160_030 Hb_001160_030 Hb_001575_020--Hb_001160_030 Hb_000069_100--Hb_002097_060 Hb_006831_030 Hb_006831_030 Hb_000069_100--Hb_006831_030 Hb_000329_330 Hb_000329_330 Hb_000069_100--Hb_000329_330 Hb_000212_260 Hb_000212_260 Hb_000069_100--Hb_000212_260 Hb_006573_220 Hb_006573_220 Hb_000069_100--Hb_006573_220 Hb_002028_130 Hb_002028_130 Hb_002078_460--Hb_002028_130 Hb_001278_050 Hb_001278_050 Hb_002078_460--Hb_001278_050 Hb_002078_460--Hb_007382_150 Hb_000865_070 Hb_000865_070 Hb_002078_460--Hb_000865_070 Hb_000032_220 Hb_000032_220 Hb_002078_460--Hb_000032_220 Hb_007382_150--Hb_002097_060 Hb_007382_150--Hb_006573_220 Hb_007382_150--Hb_000069_100 Hb_007943_090 Hb_007943_090 Hb_007382_150--Hb_007943_090 Hb_003376_030 Hb_003376_030 Hb_007382_150--Hb_003376_030 Hb_002097_060--Hb_003376_030 Hb_003455_040 Hb_003455_040 Hb_002097_060--Hb_003455_040 Hb_002097_060--Hb_006573_220 Hb_148200_010 Hb_148200_010 Hb_002097_060--Hb_148200_010 Hb_000030_100 Hb_000030_100 Hb_008289_060--Hb_000030_100 Hb_004951_040 Hb_004951_040 Hb_008289_060--Hb_004951_040 Hb_055062_030 Hb_055062_030 Hb_008289_060--Hb_055062_030 Hb_008289_060--Hb_007943_090 Hb_000146_020 Hb_000146_020 Hb_008289_060--Hb_000146_020 Hb_002918_200 Hb_002918_200 Hb_008289_060--Hb_002918_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
246.226 72.4775 51.4586 72.9696 201.903 281.246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
616.151 676.406 615.112 154.055 117.584

CAGE analysis