Hb_001616_080

Information

Type -
Description -
Location Contig1616: 116735-125479
Sequence    

Annotation

kegg
ID rcu:RCOM_1750180
description Oleoyl-acyl carrier protein thioesterase, putative (EC:3.1.2.14)
nr
ID XP_002532744.1
description Oleoyl-acyl carrier protein thioesterase, putative [Ricinus communis]
swissprot
ID Q42561
description Oleoyl-acyl carrier protein thioesterase 1, chloroplastic OS=Arabidopsis thaliana GN=FATA PE=1 SV=1
trembl
ID A9XK92
description Acyl-ACP thioesterase FatA OS=Ricinus communis GN=FATA1 PE=2 SV=1
Gene Ontology
ID GO:0016790
description acyl-acp thioesterase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14495: 116992-125461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001616_080 0.0 - - Oleoyl-acyl carrier protein thioesterase, putative [Ricinus communis]
2 Hb_000189_310 0.0908416106 - - PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
3 Hb_014720_160 0.1000930628 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
4 Hb_000922_330 0.1038426288 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
5 Hb_003069_010 0.106758442 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
6 Hb_001357_090 0.1088506516 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
7 Hb_012627_050 0.1114260829 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
8 Hb_007576_040 0.1160684102 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
9 Hb_001811_140 0.1179035491 - - hypothetical protein POPTR_0007s03140g [Populus trichocarpa]
10 Hb_000046_280 0.1189047454 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
11 Hb_007763_040 0.120091192 - - -
12 Hb_000046_300 0.1236281494 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
13 Hb_012675_090 0.1245888865 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
14 Hb_001983_030 0.1250808991 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
15 Hb_002749_090 0.1253591791 - - -
16 Hb_000563_210 0.1255293101 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
17 Hb_000883_130 0.1262399944 - - PREDICTED: novel plant SNARE 11 [Jatropha curcas]
18 Hb_000085_060 0.1263385232 - - PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]
19 Hb_001629_110 0.1268837953 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
20 Hb_002835_240 0.1268843133 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]

Gene co-expression network

sample Hb_001616_080 Hb_001616_080 Hb_000189_310 Hb_000189_310 Hb_001616_080--Hb_000189_310 Hb_014720_160 Hb_014720_160 Hb_001616_080--Hb_014720_160 Hb_000922_330 Hb_000922_330 Hb_001616_080--Hb_000922_330 Hb_003069_010 Hb_003069_010 Hb_001616_080--Hb_003069_010 Hb_001357_090 Hb_001357_090 Hb_001616_080--Hb_001357_090 Hb_012627_050 Hb_012627_050 Hb_001616_080--Hb_012627_050 Hb_000189_310--Hb_003069_010 Hb_012725_070 Hb_012725_070 Hb_000189_310--Hb_012725_070 Hb_000072_070 Hb_000072_070 Hb_000189_310--Hb_000072_070 Hb_011013_010 Hb_011013_010 Hb_000189_310--Hb_011013_010 Hb_011316_100 Hb_011316_100 Hb_000189_310--Hb_011316_100 Hb_014720_160--Hb_000922_330 Hb_007547_010 Hb_007547_010 Hb_014720_160--Hb_007547_010 Hb_000085_060 Hb_000085_060 Hb_014720_160--Hb_000085_060 Hb_003609_040 Hb_003609_040 Hb_014720_160--Hb_003609_040 Hb_000001_020 Hb_000001_020 Hb_014720_160--Hb_000001_020 Hb_005662_030 Hb_005662_030 Hb_014720_160--Hb_005662_030 Hb_003641_050 Hb_003641_050 Hb_000922_330--Hb_003641_050 Hb_000922_330--Hb_000085_060 Hb_000679_130 Hb_000679_130 Hb_000922_330--Hb_000679_130 Hb_000922_330--Hb_005662_030 Hb_002527_030 Hb_002527_030 Hb_000922_330--Hb_002527_030 Hb_005186_050 Hb_005186_050 Hb_003069_010--Hb_005186_050 Hb_010661_030 Hb_010661_030 Hb_003069_010--Hb_010661_030 Hb_003607_150 Hb_003607_150 Hb_003069_010--Hb_003607_150 Hb_003069_010--Hb_012627_050 Hb_007154_020 Hb_007154_020 Hb_003069_010--Hb_007154_020 Hb_004531_070 Hb_004531_070 Hb_003069_010--Hb_004531_070 Hb_003994_200 Hb_003994_200 Hb_001357_090--Hb_003994_200 Hb_003020_010 Hb_003020_010 Hb_001357_090--Hb_003020_010 Hb_000926_310 Hb_000926_310 Hb_001357_090--Hb_000926_310 Hb_000046_300 Hb_000046_300 Hb_001357_090--Hb_000046_300 Hb_002024_040 Hb_002024_040 Hb_001357_090--Hb_002024_040 Hb_001329_130 Hb_001329_130 Hb_001357_090--Hb_001329_130 Hb_012627_050--Hb_010661_030 Hb_001934_030 Hb_001934_030 Hb_012627_050--Hb_001934_030 Hb_007576_040 Hb_007576_040 Hb_012627_050--Hb_007576_040 Hb_009421_020 Hb_009421_020 Hb_012627_050--Hb_009421_020 Hb_000392_440 Hb_000392_440 Hb_012627_050--Hb_000392_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.4056 2.92309 21.2809 7.02739 28.726 24.4183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.1381 21.2998 17.5979 5.34937 12.0071

CAGE analysis