Hb_001616_120

Information

Type -
Description -
Location Contig1616: 143078-144462
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001616_120 0.0 - - -
2 Hb_005701_010 0.1384524231 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
3 Hb_000122_130 0.1580470355 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000069_460 0.1660946196 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
5 Hb_023292_010 0.1717217812 - - Cucumisin precursor, putative [Ricinus communis]
6 Hb_006602_010 0.17187843 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
7 Hb_022148_010 0.1745708702 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
8 Hb_049675_010 0.1750511878 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
9 Hb_168773_010 0.1759611019 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_001396_230 0.1813611466 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
11 Hb_010436_020 0.1839735519 - - Dicer-like protein 4 [Morus notabilis]
12 Hb_002154_050 0.1840773807 - - RNA binding protein, putative [Ricinus communis]
13 Hb_012490_040 0.1845093391 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
14 Hb_034271_030 0.186843785 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
15 Hb_005779_100 0.1872301409 - - DNAJ [Theobroma cacao]
16 Hb_011640_020 0.1878033242 - - hypothetical protein VITISV_036432 [Vitis vinifera]
17 Hb_004553_020 0.1878825413 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
18 Hb_002739_110 0.1883537181 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
19 Hb_000172_560 0.1903196691 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]
20 Hb_000479_330 0.192001582 - - PREDICTED: uncharacterized protein LOC105644113 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001616_120 Hb_001616_120 Hb_005701_010 Hb_005701_010 Hb_001616_120--Hb_005701_010 Hb_000122_130 Hb_000122_130 Hb_001616_120--Hb_000122_130 Hb_000069_460 Hb_000069_460 Hb_001616_120--Hb_000069_460 Hb_023292_010 Hb_023292_010 Hb_001616_120--Hb_023292_010 Hb_006602_010 Hb_006602_010 Hb_001616_120--Hb_006602_010 Hb_022148_010 Hb_022148_010 Hb_001616_120--Hb_022148_010 Hb_000563_550 Hb_000563_550 Hb_005701_010--Hb_000563_550 Hb_002603_160 Hb_002603_160 Hb_005701_010--Hb_002603_160 Hb_002551_020 Hb_002551_020 Hb_005701_010--Hb_002551_020 Hb_005188_090 Hb_005188_090 Hb_005701_010--Hb_005188_090 Hb_005701_010--Hb_000069_460 Hb_003147_050 Hb_003147_050 Hb_005701_010--Hb_003147_050 Hb_049675_010 Hb_049675_010 Hb_000122_130--Hb_049675_010 Hb_010436_020 Hb_010436_020 Hb_000122_130--Hb_010436_020 Hb_012490_040 Hb_012490_040 Hb_000122_130--Hb_012490_040 Hb_002890_340 Hb_002890_340 Hb_000122_130--Hb_002890_340 Hb_012395_190 Hb_012395_190 Hb_000122_130--Hb_012395_190 Hb_005280_010 Hb_005280_010 Hb_000122_130--Hb_005280_010 Hb_008066_010 Hb_008066_010 Hb_000069_460--Hb_008066_010 Hb_000221_270 Hb_000221_270 Hb_000069_460--Hb_000221_270 Hb_000110_160 Hb_000110_160 Hb_000069_460--Hb_000110_160 Hb_001329_300 Hb_001329_300 Hb_000069_460--Hb_001329_300 Hb_000051_110 Hb_000051_110 Hb_000069_460--Hb_000051_110 Hb_000446_090 Hb_000446_090 Hb_000069_460--Hb_000446_090 Hb_001073_050 Hb_001073_050 Hb_023292_010--Hb_001073_050 Hb_001357_080 Hb_001357_080 Hb_023292_010--Hb_001357_080 Hb_003018_190 Hb_003018_190 Hb_023292_010--Hb_003018_190 Hb_023292_010--Hb_002603_160 Hb_006935_050 Hb_006935_050 Hb_023292_010--Hb_006935_050 Hb_100804_010 Hb_100804_010 Hb_023292_010--Hb_100804_010 Hb_006602_020 Hb_006602_020 Hb_006602_010--Hb_006602_020 Hb_002154_050 Hb_002154_050 Hb_006602_010--Hb_002154_050 Hb_005779_100 Hb_005779_100 Hb_006602_010--Hb_005779_100 Hb_000700_090 Hb_000700_090 Hb_006602_010--Hb_000700_090 Hb_005539_290 Hb_005539_290 Hb_006602_010--Hb_005539_290 Hb_004735_010 Hb_004735_010 Hb_006602_010--Hb_004735_010 Hb_085863_020 Hb_085863_020 Hb_022148_010--Hb_085863_020 Hb_000291_280 Hb_000291_280 Hb_022148_010--Hb_000291_280 Hb_022148_010--Hb_010436_020 Hb_022148_010--Hb_000122_130 Hb_010436_030 Hb_010436_030 Hb_022148_010--Hb_010436_030 Hb_000139_380 Hb_000139_380 Hb_022148_010--Hb_000139_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.69304 0.665635 0.195363 0.273331 2.03635 6.71107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.16651 1.35797 8.14259 2.24309 1.11108

CAGE analysis