Hb_001617_030

Information

Type -
Description -
Location Contig1617: 20057-20371
Sequence    

Annotation

kegg
ID rcu:RCOM_0905050
description hypothetical protein
nr
ID XP_002518496.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RXM7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0905050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001617_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_122025_010 0.1593592725 - - hypothetical protein POPTR_0003s052201g, partial [Populus trichocarpa]
3 Hb_001514_080 0.1706615694 - - hypothetical protein JCGZ_16082 [Jatropha curcas]
4 Hb_000317_210 0.1857570818 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39 [Jatropha curcas]
5 Hb_000537_120 0.1868296475 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
6 Hb_000563_070 0.1916265511 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
7 Hb_000264_250 0.192319865 - - thioredoxin family protein [Arabidopsis thaliana]
8 Hb_094462_010 0.1924232768 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
9 Hb_005747_020 0.1934935703 - - bacterial-induced peroxidase [Gossypium schwendimanii]
10 Hb_002551_010 0.1936091061 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_106528_010 0.1952375329 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
12 Hb_005747_040 0.1955319485 - - PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]
13 Hb_000419_080 0.1956142977 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
14 Hb_001032_060 0.1983414089 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
15 Hb_000022_270 0.1983648528 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003685_060 0.1990316381 - - PREDICTED: laccase-15 [Jatropha curcas]
17 Hb_001114_220 0.1992281557 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
18 Hb_001604_140 0.1998057103 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
19 Hb_001114_290 0.2001039706 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000201_080 0.2011645007 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001617_030 Hb_001617_030 Hb_122025_010 Hb_122025_010 Hb_001617_030--Hb_122025_010 Hb_001514_080 Hb_001514_080 Hb_001617_030--Hb_001514_080 Hb_000317_210 Hb_000317_210 Hb_001617_030--Hb_000317_210 Hb_000537_120 Hb_000537_120 Hb_001617_030--Hb_000537_120 Hb_000563_070 Hb_000563_070 Hb_001617_030--Hb_000563_070 Hb_000264_250 Hb_000264_250 Hb_001617_030--Hb_000264_250 Hb_106528_010 Hb_106528_010 Hb_122025_010--Hb_106528_010 Hb_005747_040 Hb_005747_040 Hb_122025_010--Hb_005747_040 Hb_002551_010 Hb_002551_010 Hb_122025_010--Hb_002551_010 Hb_122025_010--Hb_000264_250 Hb_001114_290 Hb_001114_290 Hb_122025_010--Hb_001114_290 Hb_122025_010--Hb_000563_070 Hb_005144_020 Hb_005144_020 Hb_001514_080--Hb_005144_020 Hb_001514_080--Hb_000317_210 Hb_000025_510 Hb_000025_510 Hb_001514_080--Hb_000025_510 Hb_176979_010 Hb_176979_010 Hb_001514_080--Hb_176979_010 Hb_004204_160 Hb_004204_160 Hb_001514_080--Hb_004204_160 Hb_071381_010 Hb_071381_010 Hb_000317_210--Hb_071381_010 Hb_010839_070 Hb_010839_070 Hb_000317_210--Hb_010839_070 Hb_001571_010 Hb_001571_010 Hb_000317_210--Hb_001571_010 Hb_117464_010 Hb_117464_010 Hb_000317_210--Hb_117464_010 Hb_008160_020 Hb_008160_020 Hb_000317_210--Hb_008160_020 Hb_000640_270 Hb_000640_270 Hb_000317_210--Hb_000640_270 Hb_001114_220 Hb_001114_220 Hb_000537_120--Hb_001114_220 Hb_000537_120--Hb_122025_010 Hb_000537_120--Hb_000563_070 Hb_000537_120--Hb_000264_250 Hb_000537_120--Hb_002551_010 Hb_004592_020 Hb_004592_020 Hb_000537_120--Hb_004592_020 Hb_000563_070--Hb_000264_250 Hb_000563_070--Hb_002551_010 Hb_005747_020 Hb_005747_020 Hb_000563_070--Hb_005747_020 Hb_094462_010 Hb_094462_010 Hb_000563_070--Hb_094462_010 Hb_000563_070--Hb_106528_010 Hb_000563_070--Hb_005747_040 Hb_000264_250--Hb_002551_010 Hb_000264_250--Hb_106528_010 Hb_000264_250--Hb_005747_040 Hb_000264_250--Hb_005747_020 Hb_000264_250--Hb_094462_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.156655 0 0 0.132114 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.56116 0

CAGE analysis