Hb_001617_060

Information

Type -
Description -
Location Contig1617: 37371-47681
Sequence    

Annotation

kegg
ID rcu:RCOM_0905080
description nuclear acid binding protein, putative
nr
ID XP_012091367.1
description PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
swissprot
ID Q9SAB3
description Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana GN=RBP45B PE=1 SV=1
trembl
ID A0A067JAI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21233 PE=4 SV=1
Gene Ontology
ID GO:0000166
description polyadenylate-binding protein rbp45b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14509: 37386-47586 , PASA_asmbl_14511: 38884-39186 , PASA_asmbl_14512: 39727-40086
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001617_060 0.0 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
2 Hb_000613_080 0.0479327314 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
3 Hb_000470_070 0.0519347573 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
4 Hb_003966_030 0.0531515474 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
5 Hb_003362_070 0.0603156862 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
6 Hb_004102_140 0.0609180871 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004935_030 0.062971997 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
8 Hb_174821_010 0.0672964495 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
9 Hb_000390_320 0.0697876664 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
10 Hb_143629_110 0.0720206584 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
11 Hb_067345_010 0.073462766 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
12 Hb_000983_150 0.0741337795 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
13 Hb_000083_160 0.0752544782 - - Cell division cycle protein, putative [Ricinus communis]
14 Hb_001314_010 0.0767053486 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Jatropha curcas]
15 Hb_000922_370 0.0768346142 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
16 Hb_003449_070 0.0773885641 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
17 Hb_000084_120 0.0776716395 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
18 Hb_002329_040 0.077788857 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
19 Hb_000283_070 0.0778999232 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
20 Hb_001488_410 0.0783710944 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]

Gene co-expression network

sample Hb_001617_060 Hb_001617_060 Hb_000613_080 Hb_000613_080 Hb_001617_060--Hb_000613_080 Hb_000470_070 Hb_000470_070 Hb_001617_060--Hb_000470_070 Hb_003966_030 Hb_003966_030 Hb_001617_060--Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_001617_060--Hb_003362_070 Hb_004102_140 Hb_004102_140 Hb_001617_060--Hb_004102_140 Hb_004935_030 Hb_004935_030 Hb_001617_060--Hb_004935_030 Hb_000613_080--Hb_003966_030 Hb_174821_010 Hb_174821_010 Hb_000613_080--Hb_174821_010 Hb_003449_070 Hb_003449_070 Hb_000613_080--Hb_003449_070 Hb_003044_020 Hb_003044_020 Hb_000613_080--Hb_003044_020 Hb_000922_370 Hb_000922_370 Hb_000613_080--Hb_000922_370 Hb_002078_100 Hb_002078_100 Hb_000470_070--Hb_002078_100 Hb_000470_070--Hb_174821_010 Hb_019654_040 Hb_019654_040 Hb_000470_070--Hb_019654_040 Hb_000648_100 Hb_000648_100 Hb_000470_070--Hb_000648_100 Hb_009296_010 Hb_009296_010 Hb_000470_070--Hb_009296_010 Hb_003966_030--Hb_003362_070 Hb_003966_030--Hb_004102_140 Hb_003966_030--Hb_003044_020 Hb_000347_130 Hb_000347_130 Hb_003966_030--Hb_000347_130 Hb_016898_010 Hb_016898_010 Hb_003362_070--Hb_016898_010 Hb_003362_070--Hb_004935_030 Hb_048476_180 Hb_048476_180 Hb_003362_070--Hb_048476_180 Hb_003362_070--Hb_000922_370 Hb_003362_070--Hb_003044_020 Hb_001488_410 Hb_001488_410 Hb_004102_140--Hb_001488_410 Hb_004102_140--Hb_003362_070 Hb_000820_170 Hb_000820_170 Hb_004102_140--Hb_000820_170 Hb_004096_100 Hb_004096_100 Hb_004102_140--Hb_004096_100 Hb_000083_160 Hb_000083_160 Hb_004935_030--Hb_000083_160 Hb_003371_110 Hb_003371_110 Hb_004935_030--Hb_003371_110 Hb_000457_260 Hb_000457_260 Hb_004935_030--Hb_000457_260 Hb_007576_110 Hb_007576_110 Hb_004935_030--Hb_007576_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.023 42.362 30.8096 38.9672 55.2077 85.2463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.8331 24.5352 44.4062 59.8398 29.7515

CAGE analysis