Hb_001619_010

Information

Type -
Description -
Location Contig1619: 19401-21335
Sequence    

Annotation

kegg
ID vvi:100262300
description bidirectional sugar transporter SWEET2a
nr
ID XP_012091868.1
description PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
swissprot
ID Q5JJY5
description Bidirectional sugar transporter SWEET2a OS=Oryza sativa subsp. japonica GN=SWEET2A PE=2 SV=1
trembl
ID D7TJV0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g02190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001619_010 0.0 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
2 Hb_001677_230 0.1209812697 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
3 Hb_010812_140 0.1460297974 - - protein binding protein, putative [Ricinus communis]
4 Hb_012023_010 0.1496218969 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005016_120 0.1517814725 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
6 Hb_006096_020 0.1520042462 - - Os06g0343500 [Oryza sativa Japonica Group]
7 Hb_001963_110 0.1679041568 - - -
8 Hb_002888_060 0.1713961988 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
9 Hb_000059_080 0.1899762478 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
10 Hb_109489_010 0.1903479973 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
11 Hb_005470_040 0.1920595935 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
12 Hb_000600_080 0.1921966224 - - -
13 Hb_083242_020 0.1951440222 - - hypothetical protein JCGZ_20097 [Jatropha curcas]
14 Hb_000264_340 0.1954148638 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
15 Hb_010490_060 0.1960851693 - - PREDICTED: uncharacterized protein LOC105767021 [Gossypium raimondii]
16 Hb_007320_020 0.196257183 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
17 Hb_009230_020 0.1967433148 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
18 Hb_001519_240 0.197511684 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_000383_020 0.1979081329 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
20 Hb_000442_170 0.1980065527 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001619_010 Hb_001619_010 Hb_001677_230 Hb_001677_230 Hb_001619_010--Hb_001677_230 Hb_010812_140 Hb_010812_140 Hb_001619_010--Hb_010812_140 Hb_012023_010 Hb_012023_010 Hb_001619_010--Hb_012023_010 Hb_005016_120 Hb_005016_120 Hb_001619_010--Hb_005016_120 Hb_006096_020 Hb_006096_020 Hb_001619_010--Hb_006096_020 Hb_001963_110 Hb_001963_110 Hb_001619_010--Hb_001963_110 Hb_002888_060 Hb_002888_060 Hb_001677_230--Hb_002888_060 Hb_082683_010 Hb_082683_010 Hb_001677_230--Hb_082683_010 Hb_001677_230--Hb_001963_110 Hb_001677_230--Hb_006096_020 Hb_033594_100 Hb_033594_100 Hb_001677_230--Hb_033594_100 Hb_000685_040 Hb_000685_040 Hb_010812_140--Hb_000685_040 Hb_007320_020 Hb_007320_020 Hb_010812_140--Hb_007320_020 Hb_010812_140--Hb_012023_010 Hb_003767_010 Hb_003767_010 Hb_010812_140--Hb_003767_010 Hb_031949_010 Hb_031949_010 Hb_010812_140--Hb_031949_010 Hb_012023_010--Hb_006096_020 Hb_000059_080 Hb_000059_080 Hb_012023_010--Hb_000059_080 Hb_000600_080 Hb_000600_080 Hb_012023_010--Hb_000600_080 Hb_012023_010--Hb_001677_230 Hb_005016_120--Hb_001677_230 Hb_005016_120--Hb_002888_060 Hb_000383_020 Hb_000383_020 Hb_005016_120--Hb_000383_020 Hb_000264_340 Hb_000264_340 Hb_005016_120--Hb_000264_340 Hb_005470_040 Hb_005470_040 Hb_005016_120--Hb_005470_040 Hb_000816_020 Hb_000816_020 Hb_006096_020--Hb_000816_020 Hb_006096_020--Hb_082683_010 Hb_006096_020--Hb_000059_080 Hb_000442_170 Hb_000442_170 Hb_001963_110--Hb_000442_170 Hb_002308_060 Hb_002308_060 Hb_001963_110--Hb_002308_060 Hb_003992_220 Hb_003992_220 Hb_001963_110--Hb_003992_220 Hb_000776_020 Hb_000776_020 Hb_001963_110--Hb_000776_020 Hb_001963_110--Hb_002888_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.170899 2.35942 0.595827 1.00967 0.0214311 0.395054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.146729 0.0384683 0 4.40592 5.36215

CAGE analysis