Hb_001619_080

Information

Type -
Description -
Location Contig1619: 99835-101154
Sequence    

Annotation

kegg
ID rcu:RCOM_1034940
description hypothetical protein
nr
ID XP_002513906.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJI7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1034940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14540: 99438-101806
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001619_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003052_220 0.098363278 - - -
3 Hb_000003_050 0.1485690328 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
4 Hb_000723_160 0.1501453991 transcription factor TF Family: TCP PREDICTED: transcription factor TCP11 [Jatropha curcas]
5 Hb_009510_040 0.1643259732 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
6 Hb_000243_140 0.1762302104 transcription factor TF Family: SRS Lateral root primordium protein-related, putative [Theobroma cacao]
7 Hb_009486_190 0.1809757939 - - ATP binding protein, putative [Ricinus communis]
8 Hb_002138_010 0.1828303737 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
9 Hb_003095_040 0.1882125557 - - hypothetical protein CICLE_v10030016mg [Citrus clementina]
10 Hb_015690_020 0.1889050517 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
11 Hb_003878_030 0.1898801593 - - hypothetical protein POPTR_0011s11120g [Populus trichocarpa]
12 Hb_000419_060 0.1924402076 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]
13 Hb_005568_080 0.1962451821 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000703_250 0.197959846 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Jatropha curcas]
15 Hb_023536_010 0.1991807502 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
16 Hb_002929_050 0.2101820136 - - PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
17 Hb_001338_040 0.2113728329 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
18 Hb_000436_010 0.2126018979 - - PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]
19 Hb_003906_100 0.2138991596 - - hypothetical protein JCGZ_26174 [Jatropha curcas]
20 Hb_000836_080 0.2153877247 - - PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001619_080 Hb_001619_080 Hb_003052_220 Hb_003052_220 Hb_001619_080--Hb_003052_220 Hb_000003_050 Hb_000003_050 Hb_001619_080--Hb_000003_050 Hb_000723_160 Hb_000723_160 Hb_001619_080--Hb_000723_160 Hb_009510_040 Hb_009510_040 Hb_001619_080--Hb_009510_040 Hb_000243_140 Hb_000243_140 Hb_001619_080--Hb_000243_140 Hb_009486_190 Hb_009486_190 Hb_001619_080--Hb_009486_190 Hb_003095_040 Hb_003095_040 Hb_003052_220--Hb_003095_040 Hb_002138_010 Hb_002138_010 Hb_003052_220--Hb_002138_010 Hb_005568_080 Hb_005568_080 Hb_003052_220--Hb_005568_080 Hb_000260_290 Hb_000260_290 Hb_003052_220--Hb_000260_290 Hb_015690_020 Hb_015690_020 Hb_003052_220--Hb_015690_020 Hb_000003_050--Hb_000723_160 Hb_001969_090 Hb_001969_090 Hb_000003_050--Hb_001969_090 Hb_000317_280 Hb_000317_280 Hb_000003_050--Hb_000317_280 Hb_000406_120 Hb_000406_120 Hb_000003_050--Hb_000406_120 Hb_000003_050--Hb_009510_040 Hb_000503_050 Hb_000503_050 Hb_000003_050--Hb_000503_050 Hb_000196_090 Hb_000196_090 Hb_000723_160--Hb_000196_090 Hb_006816_450 Hb_006816_450 Hb_000723_160--Hb_006816_450 Hb_000436_010 Hb_000436_010 Hb_000723_160--Hb_000436_010 Hb_001329_210 Hb_001329_210 Hb_000723_160--Hb_001329_210 Hb_165669_010 Hb_165669_010 Hb_009510_040--Hb_165669_010 Hb_009510_040--Hb_000243_140 Hb_009510_040--Hb_000503_050 Hb_002577_010 Hb_002577_010 Hb_009510_040--Hb_002577_010 Hb_000419_060 Hb_000419_060 Hb_009510_040--Hb_000419_060 Hb_001117_070 Hb_001117_070 Hb_000243_140--Hb_001117_070 Hb_000640_300 Hb_000640_300 Hb_000243_140--Hb_000640_300 Hb_005333_150 Hb_005333_150 Hb_000243_140--Hb_005333_150 Hb_000243_140--Hb_003052_220 Hb_002798_060 Hb_002798_060 Hb_009486_190--Hb_002798_060 Hb_009486_190--Hb_000196_090 Hb_016604_020 Hb_016604_020 Hb_009486_190--Hb_016604_020 Hb_033772_050 Hb_033772_050 Hb_009486_190--Hb_033772_050 Hb_002540_030 Hb_002540_030 Hb_009486_190--Hb_002540_030 Hb_002609_280 Hb_002609_280 Hb_009486_190--Hb_002609_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.1641 50.2957 0.257195 4.86322 5.93519 15.1483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
73.7743 67.87 76.4964 50.4554 1.36363

CAGE analysis