Hb_001619_100

Information

Type -
Description -
Location Contig1619: 122645-123697
Sequence    

Annotation

kegg
ID pop:POPTR_1092s00200g
description hypothetical protein
nr
ID XP_012067844.1
description PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LB75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15771 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein phosphatase 1 regulatory subunit 15a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14544: 122349-123546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001619_100 0.0 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
2 Hb_004958_010 0.1325938146 - - conserved hypothetical protein [Ricinus communis]
3 Hb_102710_010 0.1533605411 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
4 Hb_023226_030 0.1595617225 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
5 Hb_001195_420 0.1665607764 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
6 Hb_002518_090 0.1717521562 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
7 Hb_000791_050 0.1775376921 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]
8 Hb_002681_120 0.1786742581 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
9 Hb_000581_030 0.1791653243 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000237_020 0.1810940376 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
11 Hb_000917_240 0.1811025858 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
12 Hb_000776_040 0.181902494 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X3 [Jatropha curcas]
13 Hb_003430_080 0.1827015336 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000003_030 0.1836013866 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000309_030 0.1838798309 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
16 Hb_005618_130 0.1841526513 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
17 Hb_003580_010 0.1898771543 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
18 Hb_005694_180 0.1908664868 - - PREDICTED: cytochrome b5 [Jatropha curcas]
19 Hb_000077_440 0.1915815436 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
20 Hb_003540_120 0.1948647746 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001619_100 Hb_001619_100 Hb_004958_010 Hb_004958_010 Hb_001619_100--Hb_004958_010 Hb_102710_010 Hb_102710_010 Hb_001619_100--Hb_102710_010 Hb_023226_030 Hb_023226_030 Hb_001619_100--Hb_023226_030 Hb_001195_420 Hb_001195_420 Hb_001619_100--Hb_001195_420 Hb_002518_090 Hb_002518_090 Hb_001619_100--Hb_002518_090 Hb_000791_050 Hb_000791_050 Hb_001619_100--Hb_000791_050 Hb_004958_010--Hb_001195_420 Hb_004958_010--Hb_102710_010 Hb_159582_010 Hb_159582_010 Hb_004958_010--Hb_159582_010 Hb_004958_010--Hb_023226_030 Hb_001775_070 Hb_001775_070 Hb_004958_010--Hb_001775_070 Hb_002681_120 Hb_002681_120 Hb_102710_010--Hb_002681_120 Hb_002774_120 Hb_002774_120 Hb_102710_010--Hb_002774_120 Hb_000581_030 Hb_000581_030 Hb_102710_010--Hb_000581_030 Hb_027380_150 Hb_027380_150 Hb_102710_010--Hb_027380_150 Hb_034507_060 Hb_034507_060 Hb_023226_030--Hb_034507_060 Hb_003430_080 Hb_003430_080 Hb_023226_030--Hb_003430_080 Hb_172706_020 Hb_172706_020 Hb_023226_030--Hb_172706_020 Hb_005694_180 Hb_005694_180 Hb_023226_030--Hb_005694_180 Hb_000309_030 Hb_000309_030 Hb_023226_030--Hb_000309_030 Hb_023226_030--Hb_001195_420 Hb_001009_150 Hb_001009_150 Hb_001195_420--Hb_001009_150 Hb_001195_420--Hb_003430_080 Hb_000363_180 Hb_000363_180 Hb_001195_420--Hb_000363_180 Hb_001195_420--Hb_005694_180 Hb_000012_400 Hb_000012_400 Hb_001195_420--Hb_000012_400 Hb_001221_390 Hb_001221_390 Hb_001195_420--Hb_001221_390 Hb_002518_090--Hb_172706_020 Hb_000940_210 Hb_000940_210 Hb_002518_090--Hb_000940_210 Hb_002518_090--Hb_023226_030 Hb_000220_110 Hb_000220_110 Hb_002518_090--Hb_000220_110 Hb_004883_020 Hb_004883_020 Hb_002518_090--Hb_004883_020 Hb_002518_090--Hb_000309_030 Hb_000318_170 Hb_000318_170 Hb_000791_050--Hb_000318_170 Hb_000791_050--Hb_001221_390 Hb_000791_050--Hb_027380_150 Hb_000737_010 Hb_000737_010 Hb_000791_050--Hb_000737_010 Hb_010050_020 Hb_010050_020 Hb_000791_050--Hb_010050_020 Hb_000438_010 Hb_000438_010 Hb_000791_050--Hb_000438_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.29737 1.81865 7.95677 9.41457 0.715923 0.846393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.950764 0.261733 0 6.48789 2.6868

CAGE analysis