Hb_001619_160

Information

Type transcription factor
Description TF Family: ERF
Location Contig1619: 171610-172752
Sequence    

Annotation

kegg
ID pop:POPTR_0005s16690g
description POPTRDRAFT_801219; hypothetical protein
nr
ID ADX97444.1
description DREB1p [Hevea brasiliensis]
swissprot
ID Q8H1E4
description Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=1 SV=1
trembl
ID F8THI6
description DREB1p (Fragment) OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor rap2-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14552: 172535-173297
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001619_160 0.0 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
2 Hb_006052_060 0.077125322 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
3 Hb_001242_190 0.1051209359 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
4 Hb_001318_140 0.1104586987 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
5 Hb_065525_010 0.1234821673 - - hypothetical protein JCGZ_01481 [Jatropha curcas]
6 Hb_001049_160 0.1248988724 - - aldose 1-epimerase, putative [Ricinus communis]
7 Hb_007382_100 0.1255602453 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
8 Hb_003430_070 0.1265460094 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
9 Hb_149484_010 0.1356315797 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
10 Hb_013405_100 0.1397776357 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
11 Hb_000087_100 0.1417520307 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
12 Hb_009476_110 0.1433725992 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
13 Hb_001754_200 0.14884367 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
14 Hb_002324_050 0.1508845402 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
15 Hb_000172_080 0.1551725869 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
16 Hb_006618_020 0.1557357111 - - Vacuolar-processing enzyme precursor [Ricinus communis]
17 Hb_172676_010 0.1574816613 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
18 Hb_132840_030 0.1611734317 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
19 Hb_000207_290 0.161462672 - - hypothetical protein JCGZ_03920 [Jatropha curcas]
20 Hb_001226_170 0.1616053675 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]

Gene co-expression network

sample Hb_001619_160 Hb_001619_160 Hb_006052_060 Hb_006052_060 Hb_001619_160--Hb_006052_060 Hb_001242_190 Hb_001242_190 Hb_001619_160--Hb_001242_190 Hb_001318_140 Hb_001318_140 Hb_001619_160--Hb_001318_140 Hb_065525_010 Hb_065525_010 Hb_001619_160--Hb_065525_010 Hb_001049_160 Hb_001049_160 Hb_001619_160--Hb_001049_160 Hb_007382_100 Hb_007382_100 Hb_001619_160--Hb_007382_100 Hb_003430_070 Hb_003430_070 Hb_006052_060--Hb_003430_070 Hb_006052_060--Hb_001318_140 Hb_172676_010 Hb_172676_010 Hb_006052_060--Hb_172676_010 Hb_149484_010 Hb_149484_010 Hb_006052_060--Hb_149484_010 Hb_006052_060--Hb_001242_190 Hb_001242_190--Hb_065525_010 Hb_001242_190--Hb_001318_140 Hb_000207_290 Hb_000207_290 Hb_001242_190--Hb_000207_290 Hb_001242_190--Hb_001049_160 Hb_001318_140--Hb_007382_100 Hb_000087_100 Hb_000087_100 Hb_001318_140--Hb_000087_100 Hb_001318_140--Hb_065525_010 Hb_001318_140--Hb_149484_010 Hb_013405_100 Hb_013405_100 Hb_065525_010--Hb_013405_100 Hb_065525_010--Hb_006052_060 Hb_065525_010--Hb_149484_010 Hb_002027_170 Hb_002027_170 Hb_001049_160--Hb_002027_170 Hb_001049_160--Hb_007382_100 Hb_002876_250 Hb_002876_250 Hb_001049_160--Hb_002876_250 Hb_001486_200 Hb_001486_200 Hb_001049_160--Hb_001486_200 Hb_001049_160--Hb_001318_140 Hb_007382_100--Hb_000087_100 Hb_001329_080 Hb_001329_080 Hb_007382_100--Hb_001329_080 Hb_001898_130 Hb_001898_130 Hb_007382_100--Hb_001898_130 Hb_007382_100--Hb_003430_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.91569 148.44 48.5327 64.6537 1.47823 1.74024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.72102 9.7107 10.4216 47.9854 52.51

CAGE analysis